SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene26168

Length: 208 nt

UniGene Fasta

>biog3_v1.0_unigene26168
AATGTGGTAATGCTGGGCATTAAGCATGCGGCCCGCGTAATGATCCCGAGGAAGAAGGGCTGCATAATCTCGACGGGCAGCGTTGCAGGGATCATGGGAGGATCTCGATTCGCGTACACGGCCTCCAAACATGCAGTGATAGGGCTGACTAAGATGGAGCAGCCGAGCTTGGGAAATTTGGGATCAGAGTCAATGCTGTATCTCCTTA

Ace file of the UniGene biog3_v1.0_unigene26168

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15552	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Short chain alcohol dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9T6C0_RICCO	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	sex determination protein tasselseed-2-like	-	-	80%

Source	InterPros	Term	Type	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NMZ3

Fln msg: Distance to subject end: 84 aas, your sequence is shorter than subject: 69 - 289

Fln protein: NVVMLGIKHAARVMIPRKKGCIISTGSVAGIMGGSRFAYTASKHAVIGLTKMEQPSLGNLGSESMLYLL

Protein Length: 70

Fln nts: AATGTGGTAATGCTGGGCATTAAGCATGCGGCCCGCGTAATGATCCCGAGGAAGAAGGGCTGCATAATCTCGACGGGCAGCGTTGCAGGGATCATGGGAGGATCTCGATTCGCGTACACGGCCTCCAAACATGCAGTGATAGGGCTGACTAAGATGGAGCAGCCGAGCTTGGGAAATTTGGGATCAGAGTCAATGCTGTATCTCCTTA

Fln Alignment:

biogeco3_mira_rep_c30047___VMLGIKHAARVMIPRKKGCIISTGSVAGIMGGSRFAYTASKHAVIGLTKMEQPSLGNLG
A9NMZ3__________________VMLGIKHAARVMIPRKKGCIISTGSVAGILGGARYSYTASKHAVIGLTKNGAAELGKFG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain