SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene26163

Length: 304 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene26163
CTAGCAATACAGACCCAGAGCCTGGAAGATGCCGAAGAACTGATGGCAAGAAATGGCGTTGCTCCAGAGACGTGGTTCCAGATCAAAAGTATTGCGAACGGCACATGCACAGGGGCCGTCATCGTTCAAGAAAGCCTGTGGAAGGCCAGACTGCGGCCCCTAATTCTCAGTCACATCTGGGAGGACCGATACCCACCATCACCACCGCAACCACCACAAACACCATTACTTCCAACGGTCCATCCCCTTCTTCTATCAGTATCGCAACTGCTCGTAACACGAACATTCACACTAGCAATACATT

Ace file of the UniGene biog3_v1.0_unigene26163 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7625	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative growth-regulating factor 5 [Zea mays] gb\|ABQ01218.1\| putative growth-regulating factor 5 [Zea mays]	-	-	2.99878e-43	35%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	92%
Blast2go	protein	-	-	0.0	70%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on acid anhydrides, In phosphorous-containing anhydrides.	EC:3.6.1.-	-	0.0	70%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	70%
Blast2go	Lipopolysaccharide biosynthesis	00540	70%
Blast2go	Folate biosynthesis	00790	70%
Blast2go	Metabolic pathways	01100	70%

Source	GOs	Term	Type	Identity
Blast2go	ATP binding	GO:0005524	Molecular Function	70%
Blast2go	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	GO:0016818	Molecular Function	70%
Blast2go	nucleus	GO:0005634	Cellular Component	70%

Source	InterPros	Term	Type	Identity
Sma3	Universal stress protein A	IPR006015	-	-
Sma3	UspA	IPR006016	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	WRC	IPR014977	-	-
Sma3	Glutamine-Leucine-Glutamine, QLQ	IPR014978	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6H175

Fln msg: Distance to subject end: 288 aas, your sequence is shorter than subject: 100 - 604

Fln protein: SNTDPEPGRCRRTDGKKWRCSRDVVPDQKYCERHMHRGRHRSRKPVEGQTAAPNSQSHLGGPIPTITTATTTNTITSNGPSPSSISIATARNTNIHTSNT

Protein Length: 101

Fln nts: CTAGCAATACAGACCCAGAGCCTGGAAGATGCCGAAGAACTGATGGCAAGAAATGGCGTTGCTCCAGAGACGTGGTTCCAGATCAAAAGTATTGCGAACGGCACATGCACAGGGGCCGTCATCGTTCAAGAAAGCCTGTGGAAGGCCAGACTGCGGCCCCTAATTCTCAGTCACATCTGGGAGGACCGATACCCACCATCACCACCGCAACCACCACAAACACCATTACTTCCAACGGTCCATCCCCTTCTTCTATCAGTATCGCAACTGCTCGTAACACGAACATTCACACTAGCAATACATT

Fln Alignment:

biogeco3_mira_rep_c30037___SNTDPEPGRCRRTDGKKWRCSRDVVPDQKYCERHMHRGRHRSRKPVEGQT
F6H175__________________NNTDPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEGQT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain