SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene26115

Length: 237 nt

UniGene Fasta

>biog3_v1.0_unigene26115
AATGTATTATTATGGCAGGGGCACTGACAGAGATTTTGAGCGTGCTGCGGAGGCTTACATGTGCTCATTACCAGGTGAATGCCCAGGCTATGTTCAACCTTGGATACATGCATGAACATGGAGAGGGCCTTCCTTTTGATTTGCACTTGGCAAAACGATATTATGATCAAGCACTAGAGACTGATCCAGCTGCTAAGTTGCCTGTGATGCTTGCACTTCTGAGTGTATGGATTAGAA

Ace file of the UniGene biog3_v1.0_unigene26115

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28875	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG0790 FOG: TPR repeat, SEL1 subfamily	-	-	3.0e-20	25%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	89%
Blast2go	protein	-	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	hyperosmotic salinity response	GO:0042538	Biological Process	81%
Blast2go	ER-associated protein catabolic process	GO:0030433	Biological Process	81%
Blast2go	membrane	GO:0016020	Cellular Component	81%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Sel1-like	IPR006597	-	-
Sma3	Tetratricopeptide TPR-3	IPR011716	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9SWV9

Fln msg: Separated hits, possible frame ERROR between 61 and 63, Distance to subject end: 80 aas, your sequence is shorter than subject: 79 - 681

Fln protein: MYYYGRGTDRDFERAAEAYxxAHYQVNAQAMFNLGYMHEHGEGLPFDLHLAKRYYDQALETDPAAKLPVMLALLSVWIR

Protein Length: 80

Fln nts: AATGTATTATTATGGCAGGGGCACTGACAGAGATTTTGAGCGTGCTGCGGAGGCTTACATxxxTGCTCATTACCAGGTGAATGCCCAGGCTATGTTCAACCTTGGATACATGCATGAACATGGAGAGGGCCTTCCTTTTGATTTGCACTTGGCAAAACGATATTATGATCAAGCACTAGAGACTGATCCAGCTGCTAAGTTGCCTGTGATGCTTGCACTTCTGAGTGTATGGATTAGAA

Fln Alignment:

biogeco3_mira_rep_c29944___YYYGRGTDRDFERAAEAYMxAHYQVNAQAMFNLGYMHEHGEGLPFDLHLAKRYYDQALETDPAAKLPVMLALLSVWIR
B9SWV9__________________YYYGRGTERDYERAAEAYMxAKSQSNAQAMFNLGYMHEHGQGLPFDLHLAKRYYDQALEIDPAAKLPVTLALTSLWVR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain