SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene26073

Length: 224 nt

UniGene Fasta

>biog3_v1.0_unigene26073
AATGTAGTGACACACATGGATGGTGTTTTGGGTCTTGGCAGTGGTATGGCAAGTCTTCCATCTCAATGGGCAAAGCAAGGCCACGTCAAGAATGTGATAGGTCACTGTATTTCTGGAAGAGGACAAGGAGGGGGATACATGTTCTTTGGTGATGATCTTGTATCCACCTCAGCCATGACTTGGGTTCCCATGCTTGGCAAGCCATCCACAAAACATTATGATGT

Ace file of the UniGene biog3_v1.0_unigene26073

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2370	1/2
SustainPine v2.0	sp_v2.0_unigene33946	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	aspartyl protease [Arabidopsis thaliana] gb\|AAF69716.1\|AC016041_21 F27J15.15 [Arabidopsis thaliana] gb\|AAK25892.1\|AF360182_1 unknown protein [Arabidopsis thaliana] gb\|AAK64075.1\| unknown protein [Arabidopsis thaliana] gb\|AEE32388.1\| aspartyl protease [Ara	-	-	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	aspartic proteinase asp1-like	-	-	66%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Aspartic endopeptidases.	EC:3.4.23.-	-	0.0	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	0.0	66%
Blast2go	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	0.0	66%

Source	InterPros	Term	Type	Identity
Sma3	Protease inhibitor I4, serpin	IPR000215	-	-
Sma3	Peptidase A1	IPR001461	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRU1

Fln msg: Distance to subject end: 166 aas, your sequence is shorter than subject: 74 - 446

Fln protein: NVVTHMDGVLGLGSGMASLPSQWAKQGHVKNVIGHCISGRGQGGGYMFFGDDLVSTSAMTWVPMLGKPSTKHYD

Protein Length: 75

Fln nts: AATGTAGTGACACACATGGATGGTGTTTTGGGTCTTGGCAGTGGTATGGCAAGTCTTCCATCTCAATGGGCAAAGCAAGGCCACGTCAAGAATGTGATAGGTCACTGTATTTCTGGAAGAGGACAAGGAGGGGGATACATGTTCTTTGGTGATGATCTTGTATCCACCTCAGCCATGACTTGGGTTCCCATGCTTGGCAAGCCATCCACAAAACATTATGATGT

Fln Alignment:

biogeco3_mira_rep_c29856___DGVLGLGSGMASLPSQWAKQGHVKNVIGHCISXXXXXXXXXXXXDDLVSTSAMTWVPMLGKPSTKHY
B8LRU1__________________DGILGLGSGMASLPSQWAKQGLIKNVIGHCIFGAGRDGGYMFFGDDLVSTSAMTWVPMLGRPSIKHY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain