SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene26030

Length: 456 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene26030
CTATCAAGGATGATTTCCTTCATGGCTATCTGCAGGAGATCGGAGGCTCCTACTATCCTCCCCAAACAACGTAGTGCCGAACGTGATCGTGGCTAAGGATGGCTCTGGCAATTTCAAAACGATTTCACAAGCCATAGCTGCGGCTCCAGAGAAAAGTGGTAACAGATATGTGATCAAGGTGAAGAAGGGAACGTACAAGGAGAACGTGGAGGTGGGTAAAACGAAGACTAATATCATGTTGATTGGAGAAGGCATGGAGGCCACAATCATTACAGGAAGCAGAAATGTGATAGACGGATCCACCACTTTCAATTCCGCCACATTCGCTGCTGTAGGGAAGGGTTTTATGGCACAAGACATGGCGTTCGTCAACACAGCAGGCCCAGACAAACATCAGGCGGTGGCTCTTCGAGTAGGATCTGATCAATCAGTGTTATATCGCTGCAAGATTACATT

Ace file of the UniGene biog3_v1.0_unigene26030 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3106	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Pectinesterase n=1 Tax=Picea sitchensis RepID=A9NVV0_PICSI	-	-	85%
FL-Next	sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	pectin methylesterase	-	-	69%

Source	ECs	Term	Type	e value	Identity
Blast2go	Pectinesterase.	EC:3.1.1.11	-	0.0	69%

Source	KEGGs	Term	Identity
Blast2go	Pentose and glucuronate interconversions	00040	69%
Blast2go	Starch and sucrose metabolism	00500	69%
Blast2go	Metabolic pathways	01100	69%

Source	GOs	Term	Type	Identity
Blast2go	cell wall modification	GO:0042545	Biological Process	69%
Blast2go	negative regulation of catalytic activity	GO:0043086	Biological Process	69%
Blast2go	pectinesterase activity	GO:0030599	Molecular Function	69%
Blast2go	aspartyl esterase activity	GO:0045330	Molecular Function	69%
Blast2go	enzyme inhibitor activity	GO:0004857	Molecular Function	69%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	69%
Blast2go	cell wall	GO:0005618	Cellular Component	69%

Source	InterPros	Term	Type	Identity
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	Pectinesterase, active site	IPR018040	-	-
Sma3	Pectinesterase, catalytic	IPR000070	-	-
Sma3	Pectinesterase inhibitor	IPR006501	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVV0

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 188 aas, your sequence is shorter than subject: 151 - 557

Fln protein: YQG*FPSWLSAGDRRLLLSSPNNVVPNVIVAKDGSGNFKTISQAIAAAPEKSGNRYVIKVKKGTYKENVEVGKTKTNIMLIGEGMEATIITGSRNVIDGSTTFNSATFAAVGKGFMAQDMAFVNTAGPDKHQAVALRVGSDQSVLYRCKIT

Protein Length: 152

Fln nts: CTATCAAGGATGATTTCCTTCATGGCTATCTGCAGGAGATCGGAGGCTCCTACTATCCTCCCCAAACAACGTAGTGCCGAACGTGATCGTGGCTAAGGATGGCTCTGGCAATTTCAAAACGATTTCACAAGCCATAGCTGCGGCTCCAGAGAAAAGTGGTAACAGATATGTGATCAAGGTGAAGAAGGGAACGTACAAGGAGAACGTGGAGGTGGGTAAAACGAAGACTAATATCATGTTGATTGGAGAAGGCATGGAGGCCACAATCATTACAGGAAGCAGAAATGTGATAGACGGATCCACCACTTTCAATTCCGCCACATTCGCTGCTGTAGGGAAGGGTTTTATGGCACAAGACATGGCGTTCGTCAACACAGCAGGCCCAGACAAACATCAGGCGGTGGCTCTTCGAGTAGGATCTGATCAATCAGTGTTATATCGCTGCAAGATTACATT

Fln Alignment:

biogeco3_mira_rep_c29785___FPSWLSAGDRRXXXXXXXXXXXXVIVAKDGSGNFKTISQAIAAAPEKSGNRYVIKVKKGTYKENVEVGKTKTNIMLIGEGMEATIITGSRNVIDGSTTFNSATFAAVGKGFMAQDMAFVNTAGPDKHQAVALRVGSDQSVLYRCKI
A9NVV0__________________FPSWLSPGDRRLLRTSANDVVPNVIVAQDGSGNFKTITQAIAAAPEKSPKRYVIKVKKGTYKENVQVGKTKTNIMLIGEGMEATIVTGSRNVIDGSTTFNSATFAAVGNGFMAQDMAFVNTAGPQKHQAVALRVGSDQSVLYRCKI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain