SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25992

Length: 448 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene25992
ACCAGTATGGATACTTGTCAGGTAGAAATCAAGGGAGTCGTACTGGTTGGCGTGAGTGTTTCGAGAGAGGTTGTACCAACCTTTGCCCGAGTCTTGTTGCACACCTCAATGGGAAGACACATGTTGCGTCCTCTTTTACGGTCTGAAATAATCCAAGTTGCCAATCGCCGAGCTTGGTATGATGCATCAAAGCTGACACCAGATATTCTGGACCTTTATAAGGCACCATTGCGGGTGGAAGGATGGGATAATGCACTTGCAGAAGTTGGCAAGTTATCCATAGGAACTATGCTCTCTTCAAACAATGTCTTAGCTTTGTTGAAAGCATTGCAATGGTTGCCAGTGCTAATAGCAACTGGTGCAGAAGATATTCTAGTTTCATTACGTTCTTCTCAAGCTCTAGCATCTAAGTTTTCTGATTCAAGACTAGTTGCAATTTCTGGACATT

Ace file of the UniGene biog3_v1.0_unigene25992 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22081	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Alpha/beta hydrolase-like n=2 Tax=Oryza sativa RepID=Q5VQE5_ORYSJ	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	34%
Blast2go	alpha beta fold family protein	-	-	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	0.0	-
Sma3	Epoxide hydrolase-like	IPR000639	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AB65

Fln msg: Distance to subject end: 34 aas, your sequence is shorter than subject: 149 - 363

Fln protein: TSMDTCQVEIKGVVLVGVSVSREVVPTFARVLLHTSMGRHMLRPLLRSEIIQVANRRAWYDASKLTPDILDLYKAPLRVEGWDNALAEVGKLSIGTMLSSNNVLALLKALQWLPVLIATGAEDILVSLRSSQALASKFSDSRLVAISGH

Protein Length: 150

Fln nts: ACCAGTATGGATACTTGTCAGGTAGAAATCAAGGGAGTCGTACTGGTTGGCGTGAGTGTTTCGAGAGAGGTTGTACCAACCTTTGCCCGAGTCTTGTTGCACACCTCAATGGGAAGACACATGTTGCGTCCTCTTTTACGGTCTGAAATAATCCAAGTTGCCAATCGCCGAGCTTGGTATGATGCATCAAAGCTGACACCAGATATTCTGGACCTTTATAAGGCACCATTGCGGGTGGAAGGATGGGATAATGCACTTGCAGAAGTTGGCAAGTTATCCATAGGAACTATGCTCTCTTCAAACAATGTCTTAGCTTTGTTGAAAGCATTGCAATGGTTGCCAGTGCTAATAGCAACTGGTGCAGAAGATATTCTAGTTTCATTACGTTCTTCTCAAGCTCTAGCATCTAAGTTTTCTGATTCAAGACTAGTTGCAATTTCTGGACATT

Fln Alignment:

biogeco3_mira_rep_c29696___MLRPLLRSEIIQVANRRAWYDASKLTPDILDLYKAPLRVEGWDNALAEVGKLSIGTMLSSNNVLALLKALQWL--PVLIATGAEDILVSLRSSQALASKFSDSRLVAIS--GH
D5AB65__________________MLVRLIMDKYSREAVRYAWYDSQKVTDHVIQGYTKPLKCKGWERALLEFTLATI-TDSASEGKPPLKKRLKDISCPVLVVTGDTDRLVPAWNAERLAKAIPGSKFEVIKNCGH

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
143	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain