SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25985

Length: 400 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene25985
GCCTGTACAAATTGTGGACGAGAGAACTATAAGTCGAAACTGCATTTTTAACGACCGAATTAAGGGTGGAGTCCTAGCTCGCTTTTATGGAGCTGCATTTATGCTTGGGTAGATCCGTTTGCGGAACCTGAGGAAATGCTGCTTCGGAGTAAGATTACGCAATCTTCCGTGGAGCCAATTGGAAAACCTAATCAAGAAAACCTAATCCAGAAAATTCATCTCAACACAATAAGCCTGTTGGTGAGGGGCTTAAAATAAAAATTTGTACTCGTAAGAGAACAAAACGAGAAGAGCTCGAGCGAATTCGTAATCAAGGGAAAGAGAAAGAGAAAGTCCCTTCCAATGATGTTATGACAGATGGTTCTGGGAAAAAGATGCGCCGGATAAAAGTCATGACATT

Ace file of the UniGene biog3_v1.0_unigene25985 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17747	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PWWP domain containing protein	-	-	4.0e-05	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	unknown [Picea sitchensis]	-	-	2.38221e-44	66%

Source	InterPros	Term	Type	e value	Identity
Sma3	PWWP	IPR000313	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ11

Fln msg: Overlapping hits, possible frame ERROR between 94 and 91, Unexpected STOP codon at 3' end. Distance to subject end: 39 aas, your sequence is shorter than subject: 86 - 241

Fln protein: PVQIVDERTISRNCIFNDRIKGGVLARFYxxxIYAWVDPFAEPEEMLLRSKITQSSVEPIGKPNQENLIQKIHLNTISLLVRGLK*

Protein Length: 87

Fln nts: GCCTGTACAAATTGTGGACGAGAGAACTATAAGTCGAAACTGCATTTTTAACGACCGAATTAAGGGTGGAGTCCTAGCTCGCTTTTATxxxxxxxxxATTTATGCTTGGGTAGATCCGTTTGCGGAACCTGAGGAAATGCTGCTTCGGAGTAAGATTACGCAATCTTCCGTGGAGCCAATTGGAAAACCTAATCAAGAAAACCTAATCCAGAAAATTCATCTCAACACAATAAGCCTGTTGGTGAGGGGCTTAAAATAAAAATTTGTACTCGTAAGAGAACAAAACGAGAAGAGCTCGAGCGAATTCGTAATCAAGGGAAAGAGAAAGAGAAAGTCCCTTCCAATGATGTTATGACAGATGGTTCTGGGAAAAAGATGCGCCGGATAAAAGTCATGACATT

Fln Alignment:

biogeco3_mira_rep_c29674___PVQIVDERTISRNCIFNDRIKGGVLARFYGxCIYAWVDPFAE----------------------PEEMLLRSKITQSSVEPIGK
B8LQ11__________________PVQIVDEKTISQNCIFNDRIKGGVLARFYGxCIYAWVDPFAHVSQFQGSFKEKGSNLRAFQKALEEEMLLRSKIVKSSVEPNGK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
85	33	66			0.997471
86	33	66			0.997471

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain