SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25974

Length: 288 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene25974
GGAGTCTTGCCGTGAGGTTGCAAAGAACTACCCTGGCATAAAGTATAATGAGATCATTGTTGATAACTGCTGTATGCAACTTGTTTCAAAGCCTGAACAATTTGATGTTATGGTTACACCAAATCTGTATGGTAATTTGGTGGCAAATACTGCGGCTGGTATTGCGACTGGCACTGGGGTTATGCCAGGAGGAAATGTTGGTGCTGACCATGCTGTTTTTGAACAAGGAGCTTCTGCTGGGAATGTTGGGAATGAAAGGTTGGTTGTGAAGAAAAAAGCCAACACATT

Ace file of the UniGene biog3_v1.0_unigene25974 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10017	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial n=4 Tax=Brassicaceae RepID=IDH1_ARATH	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	isocitrate dehydrogenase	-	-	94%

Source	ECs	Term	Type	e value	Identity
Blast2go	Isocitrate dehydrogenase (NAD(+)).	EC:1.1.1.41	-	0.0	94%

Source	KEGGs	Term	Identity
Blast2go	Citrate cycle (TCA cycle)	00020	94%
Blast2go	Biosynthesis of terpenoids and steroids	01062	94%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	94%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	94%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	94%
Blast2go	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	94%
Blast2go	Biosynthesis of plant hormones	01070	94%
Blast2go	Metabolic pathways	01100	94%
Blast2go	Biosynthesis of secondary metabolites	01110	94%

Source	GOs	Term	Type	Identity
Blast2go	tricarboxylic acid cycle	GO:0006099	Biological Process	94%
Blast2go	isocitrate metabolic process	GO:0006102	Biological Process	94%
Blast2go	NAD binding	GO:0051287	Molecular Function	94%
Blast2go	magnesium ion binding	GO:0000287	Molecular Function	94%
Blast2go	isocitrate dehydrogenase (NAD+) activity	GO:0004449	Molecular Function	94%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	94%
Blast2go	mitochondrion	GO:0005739	Cellular Component	94%

Source	InterPros	Term	Type	e value	Identity
Sma3	Isocitrate dehydrogenase NAD-dependent	IPR004434	-	0.0	-
Sma3	Isocitrate/isopropylmalate dehydrogenase	IPR001804	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPK1

Fln msg: Distance to subject end: 58 aas, your sequence is shorter than subject: 95 - 378

Fln protein: ESCREVAKNYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIATGTGVMPGGNVGADHAVFEQGASAGNVGNERLVVKKKANT

Protein Length: 96

Fln nts: GGAGTCTTGCCGTGAGGTTGCAAAGAACTACCCTGGCATAAAGTATAATGAGATCATTGTTGATAACTGCTGTATGCAACTTGTTTCAAAGCCTGAACAATTTGATGTTATGGTTACACCAAATCTGTATGGTAATTTGGTGGCAAATACTGCGGCTGGTATTGCGACTGGCACTGGGGTTATGCCAGGAGGAAATGTTGGTGCTGACCATGCTGTTTTTGAACAAGGAGCTTCTGCTGGGAATGTTGGGAATGAAAGGTTGGTTGTGAAGAAAAAAGCCAACACATT

Fln Alignment:

biogeco3_mira_rep_c29638___ESCREVAKNYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANXXXXXXXXXGVMPGGNVGADHAVFEQGASAGNVGNERLVVKKKAN
B8LPK1__________________ESSREVAKKYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAIFEQGASAGNVGNEKLVVKKRAN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain