SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25937

Length: 502 nt

UniGene Fasta

>biog3_v1.0_unigene25937
AATGTATTTTCCTTTCTCCACAGCGGGGGGCATTAGTAAAGGGCCCTGTGTTCGGTTGATTGCAGGGCTGTCTGTTCCCCTTTAAAAGCGATCGATCCGATTGGTTGAATTGGAGGGTTGAGAGGTGGGTTGTCTTTGATTGAACTCCATTTTGGACACTCAGTTGAACTGGTTGGATATTGTGTGTTGGAAGCATGCGAGTGCTTGCTTATGAGTTTGCACCCATGGGGTCACTTCATGACATCCTTCATGGTAAAAAGGAGTGAAAGGAGCACTACCAGGTCCTGTTCTCACTTGGATGCAGAGAGTGAAAATTGCAATAGGTGCTGCAAAAGGGCTTGAGTACCTCCATGAGAAGGCACAACCACCTATCATTCACCGGGATATTAAGTCTAGCAATGTCTTACTTTTCGACGACTATACAGCAAAGATAGCTGATTTTGATATATCAAACCAATCTCCTGACATGTCGGCACGGCTTCATTCCACTCGTGTGCACATT

Ace file of the UniGene biog3_v1.0_unigene25937

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10612	1/3

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Pto-interacting protein 1; Short=Pti1; AltName: Full=Pto kinase interactor 1 gb\|AAC61805.1\| Pto kinase interactor 1 [Solanum lycopersicum]	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	pto kinase interactor	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	0.0	85%

Source	GOs	Term	Type	Identity
Blast2go	plant-type hypersensitive response	GO:0009626	Biological Process	85%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	85%
Blast2go	ATP binding	GO:0005524	Molecular Function	85%
Blast2go	MAP kinase kinase kinase activity	GO:0004709	Molecular Function	85%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3		IPR017442	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVM5

Fln msg: Overlapping hits, possible frame ERROR between 260 and 257, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 124 aas, your sequence is shorter than subject: 167 - 362

Fln protein: CIFLSPQRGALVKGPVFG*LQGCLFPFKSDRSDWLNWRVERWVVFD*TPFWTLS*TGWILCVGSMRVLAYEFAPMGSLHDILHGxxxVKGALPGPVLTWMQRVKIAIGAAKGLEYLHEKAQPPIIHRDIKSSNVLLFDDYTAKIADFDISNQSPDMSARLHSTRVHI

Protein Length: 168

Fln nts: AATGTATTTTCCTTTCTCCACAGCGGGGGGCATTAGTAAAGGGCCCTGTGTTCGGTTGATTGCAGGGCTGTCTGTTCCCCTTTAAAAGCGATCGATCCGATTGGTTGAATTGGAGGGTTGAGAGGTGGGTTGTCTTTGATTGAACTCCATTTTGGACACTCAGTTGAACTGGTTGGATATTGTGTGTTGGAAGCATGCGAGTGCTTGCTTATGAGTTTGCACCCATGGGGTCACTTCATGACATCCTTCATGGTxxxxxxxxxGTGAAAGGAGCACTACCAGGTCCTGTTCTCACTTGGATGCAGAGAGTGAAAATTGCAATAGGTGCTGCAAAAGGGCTTGAGTACCTCCATGAGAAGGCACAACCACCTATCATTCACCGGGATATTAAGTCTAGCAATGTCTTACTTTTCGACGACTATACAGCAAAGATAGCTGATTTTGATATATCAAACCAATCTCCTGACATGTCGGCACGGCTTCATTCCACTCGTGTGCACATT

Fln Alignment:

biogeco3_mira_rep_c29512___CV-GSMRVLAYEFAPMGSLHDILHGKxGVKGALPGPVLTWMQRVKIAIGAAKGLEYLHEKAQPPIIHRDIKSSNVLLFDDYTAKIADFDISNQSPDMSARLHSTRV
A9NVM5__________________CVDGSMRVLAYEFAPMGSLHDILHGKxGVKGAQPGPVLTWMQRVKIAIGAAKGLEYLHEKAQPPIIHRDIKSSNVLLFDDYTAKIADFDLSNQAPDMSARLHSTRV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain