SustainPineDB

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Assembly info
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ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25930

Length: 364 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene25930
GGCTGCGCTCCAAGAGGCGGCGGAGGCGTACCTGGTGGGTCTCTTTGAAGACACCAACCTCTGTGCCATCCACGCCAAGAGGGTGACCATCATGCCTAAAGATATTCAGCTCGCCCGCCGCATCCGTGGAGAGAGGGCTTGATTCTTTATCTTTCTATTACCAAACGGTGTGTTTTCACACCACCATTTTTCTCTTCCTAATATCTGTTACCCCTTCTCTCTGGTCTATTGATGAGGTTGCCAGAGATCGAGATTAATTTGTTGTGGTTGAATATTTCTGCACGGGTGATTAAATAGTTTATAAAACAATTTTGTTGTTTTAATACTTAGTTTTGACTTGCTAATATATCCTTGTGAAGACATT

Ace file of the UniGene biog3_v1.0_unigene25930 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene82644	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: histone H3.2-like n=1 Tax=Danio rerio RepID=UPI0001CF207B	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	histone h3	-	-	98%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	98%
Blast2go	plastid	GO:0009536	Cellular Component	0.0	98%

Source	InterPros	Term	Type	Identity
Sma3	Histone-fold	IPR009072	-	-
Sma3	Histone core	IPR007125	-	-
Sma3	Histone H3	IPR000164	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQH4

Fln msg: your sequence is shorter than subject: 47 - 136

Fln protein: AALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA*

Protein Length: 48

Fln nts: GGCTGCGCTCCAAGAGGCGGCGGAGGCGTACCTGGTGGGTCTCTTTGAAGACACCAACCTCTGTGCCATCCACGCCAAGAGGGTGACCATCATGCCTAAAGATATTCAGCTCGCCCGCCGCATCCGTGGAGAGAGGGCTTGA___TTCTTTATCTTTCTATTACCAAACGGTGTGTTTTCACACCACCATTTTTCTCTTCCTAATATCTGTTACCCCTTCTCTCTGGTCTATTGATGAGGTTGCCAGAGATCGAGATTAATTTGTTGTGGTTGAATATTTCTGCACGGGTGATTAAATAGTTTATAAAACAATTTTGTTGTTTTAATACTTAGTTTTGACTTGCTAATATATCCTTGTGAAGACATT

Fln Alignment:

biogeco3_mira_c29502___AALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
C0PQH4__________________AALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain