SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25888

Length: 332 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene25888
GGTATTCAGTCAAACGGGCATCGGCGCACATCATTGTACTATCAAGCTATTCACCATTTGCGAAATATACTCCTCAGTGGGTATGGCTGAAGAGTGAGATACAACATGTTGACAGAGAGAAAACACCTTGGCTTATTGTTCTTATGCATGCTCCACTTTACAATAGTAACAGTTTTCACTACATGGAAGGAGAGAGTATGCGAACTGTGTTTGAGTCATGGTTCATAAAATACAAAGTCGACATTATTTTTGCAGGCCATGTTCATGCATATGAGCGATCTTATAGAATGTCAAATGTAAAATATAACATTACAAATGGAGCATGTAACATT

Ace file of the UniGene biog3_v1.0_unigene25888 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11933	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	putative secretory acid phosphatase precursor [Oryza sativa Japonica Group]	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	purple acid phosphatase-like protein	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Acid phosphatase.	EC:3.1.3.2	-	0.0	84%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Aminobenzoate degradation	00627		0.0	84%
Blast2go	Riboflavin metabolism	00740		0.0	84%

Source	GOs	Term	Type	Identity
Blast2go	protein dephosphorylation	GO:0006470	Biological Process	84%
Blast2go	metal ion binding	GO:0046872	Molecular Function	84%
Blast2go	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	84%
Blast2go	acid phosphatase activity	GO:0003993	Molecular Function	84%
Blast2go	protein serine/threonine phosphatase complex	GO:0008287	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	MIF4G-like, type 3	IPR003890	-	-
Sma3	Initiation factor eIF-4 gamma, MA3	IPR003891	-	-
Sma3	Fibronectin, type III	IPR003961	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Fatty acid hydroxylase	IPR006694	-	-
Sma3	Purple acid phosphatase, N-terminal	IPR015914	-	-
Sma3	MIF4-like, type 1/2/3	IPR016021	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVR5

Fln msg: Distance to subject end: 107 aas, your sequence is shorter than subject: 110 - 517

Fln protein: YSVKRASAHIIVLSSYSPFAKYTPQWVWLKSEIQHVDREKTPWLIVLMHAPLYNSNSFHYMEGESMRTVFESWFIKYKVDIIFAGHVHAYERSYRMSNVKYNITNGACNI

Protein Length: 111

Fln nts: GGTATTCAGTCAAACGGGCATCGGCGCACATCATTGTACTATCAAGCTATTCACCATTTGCGAAATATACTCCTCAGTGGGTATGGCTGAAGAGTGAGATACAACATGTTGACAGAGAGAAAACACCTTGGCTTATTGTTCTTATGCATGCTCCACTTTACAATAGTAACAGTTTTCACTACATGGAAGGAGAGAGTATGCGAACTGTGTTTGAGTCATGGTTCATAAAATACAAAGTCGACATTATTTTTGCAGGCCATGTTCATGCATATGAGCGATCTTATAGAATGTCAAATGTAAAATATAACATTACAAATGGAGCATGTAACATT

Fln Alignment:

biogeco3_mira_rep_c29376___YSVKRASAHIIVLSSYSPFAKYTPQWVWLKSEIQHVDREKTPWLIVLMHAPLYNSNSFHYMEGESMRTVFESWFIKYKVDIIFAGHVHAYERSYRMSNVKYNITNGAC
A9NVR5__________________YSIKRASAHIIVLSSYSPYAKYTPQWVWLRSELQHVDREKTPWLIVLMHAPLYNSNSFHYMEGESMRTVFELWFIKYKVDIIFAGHVHAYERSYRISNVKYNITNGAC

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
59	33	66			0.997458
60	33			66	0.997458
61		66		33	0.997461
62	66		33		0.997461

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain