SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25885

Length: 238 nt

UniGene Fasta

>biog3_v1.0_unigene25885
AATGTTTGTGTGGAAGGCTCTGATCCTCTGAGACTGTTCGAGAGGCGAATGAATATGAAAAATGCTATGTCTGCACAATTTGATCGAACATTATTGGAGTATTATGATCACATGCGCTTTAGCGGGACTCCACTTTACACTGAAACTGAGGAACAAGCTAGAGTTCTTCAAATGGATGATGAGAAGGAAGCTTTGACAGAAGCAGCCGTTCTTGCAGCTCCTCTGAAGTTGGTATATA

Ace file of the UniGene biog3_v1.0_unigene25885

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene60152	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	antitermination NusB domain-containing protein [Arabidopsis thaliana] gb\|AAK96755.1\| putative protein [Arabidopsis thaliana] gb\|AAP42720.1\| At4g26370 [Arabidopsis thaliana] gb\|AEE85189.1\| antitermination NusB domain-containing protein [Arabidopsis thalian	-	-	3.0e-28	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	antitermination domain-containing protein	-	-	0.0	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	NusB/RsmB/TIM44	IPR006027	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVY9

Fln msg: Distance to subject end: 125 aas, your sequence is shorter than subject: 79 - 324

Fln protein: NVCVEGSDPLRLFERRMNMKNAMSAQFDRTLLEYYDHMRFSGTPLYTETEEQARVLQMDDEKEALTEAAVLAAPLKLVY

Protein Length: 80

Fln nts: AATGTTTGTGTGGAAGGCTCTGATCCTCTGAGACTGTTCGAGAGGCGAATGAATATGAAAAATGCTATGTCTGCACAATTTGATCGAACATTATTGGAGTATTATGATCACATGCGCTTTAGCGGGACTCCACTTTACACTGAAACTGAGGAACAAGCTAGAGTTCTTCAAATGGATGATGAGAAGGAAGCTTTGACAGAAGCAGCCGTTCTTGCAGCTCCTCTGAAGTTGGTATATA

Fln Alignment:

biogeco3_mira_rep_c29361___CVEGSDPLRLFERRMNMKNAMSAQFDRTLLEYYDHMRFSGTPLYTETEEQARVLQMDDEKEALTEAAVLAAPLKLVY
A9NVY9__________________CVEGSDPLRLFERRMNMKTAMSAQFDQTLLEYYDHMHFCGTPLYTETEEQARVLQMEDEKEALTEAAILAAPPKLVY

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
80			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain