SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25870

Length: 251 nt

UniGene Fasta

>biog3_v1.0_unigene25870
GAACAACATTTAAAGAGTCTTATTGCACAGGGCCCGAGCGTTGGTGATGTTGATGGAGATGGACATACAGACCTGGTAGTTCCAACAATTTCAGGCAACATTTATGTTCTGAATGGAAAGGATGGATCATATGTGAAGCCATTCCCTTATCGCACTCATGGGAGGATCATGAGTCCAGTCCTTCTGGTTGACCTGAGTAAGCGTGGAGAAAATCGTAAAGGGCTAACTCTTGCTACAACATCATTTACATT

Ace file of the UniGene biog3_v1.0_unigene25870

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1763	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	defective in exine formation [Arabidopsis thaliana]	-	-	75%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	78%
Blast2go	defective in exine formation protein	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	pollen wall assembly	GO:0010208	Biological Process	85%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	85%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	85%
Blast2go	membrane	GO:0016020	Cellular Component	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	FG-GAP	IPR013517	-	0.0	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9IG47

Fln msg: Distance to subject end: 61 aas, your sequence is shorter than subject: 83 - 701

Fln protein: EQHLKSLIAQGPSVGDVDGDGHTDLVVPTISGNIYVLNGKDGSYVKPFPYRTHGRIMSPVLLVDLSKRGENRKGLTLATTSFT

Protein Length: 84

Fln nts: GAACAACATTTAAAGAGTCTTATTGCACAGGGCCCGAGCGTTGGTGATGTTGATGGAGATGGACATACAGACCTGGTAGTTCCAACAATTTCAGGCAACATTTATGTTCTGAATGGAAAGGATGGATCATATGTGAAGCCATTCCCTTATCGCACTCATGGGAGGATCATGAGTCCAGTCCTTCTGGTTGACCTGAGTAAGCGTGGAGAAAATCGTAAAGGGCTAACTCTTGCTACAACATCATTTACATT

Fln Alignment:

biogeco3_mira_rep_c29323___EQHLKSLIAQGPSVGDVDGDGHTDLVVPTISGNIYVLNGKDGSYVKPFPYRTHGRIMSPVLLVDLSKRGENRKGLTLATTSF
B9IG47__________________EKHLKSLVSQGPTIGDVDGDGHTDVVVPTLSGNIYVLSGKDGSIVRPYPYRTHGRVMNQVLLLDLSKRGEKNKGLTLVTTSF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain