SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25857

Length: 295 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene25857
ATGTGATGTATTTCTAGTACAGCCAACCTGTCCACCTGCCAATGAGAACTTAATGGAGTTACTTGTAATGGTTGATGCATGTCGTCGGGCATCTGCTCGAAATATAACTGCTGTCATTCCCTATTTTGGATATGCTCGAGCTGATCGTAAGACTCTAGGTCGTGAATCTATTGCTGCAAAACTTGTGGCAAACTTGATCACTGAAGCTGGTGCCAACCGTGTACTTGCTTGTGACTTGCATTCTGGGCAATCAATGGGGTACTTTGACATTCCGGTGGATCATGTCTATGACATT

Ace file of the UniGene biog3_v1.0_unigene25857 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28113	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Ribose-phosphate pyrophosphokinase n=3 Tax=Physcomitrella patens subsp. patens RepID=A9T1V2_PHYPA	-	-	89%
FL-Next	sp=Ribose-phosphate pyrophosphokinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	protein	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	nucleobase-containing small molecule metabolic process	GO:0055086	Biological Process	90%
Blast2go	cellular biosynthetic process	GO:0044249	Biological Process	90%
Blast2go	transferase activity	GO:0016740	Molecular Function	90%

Source	InterPros	Term	Type	Identity
Sma3	Phosphoribosyltransferase	IPR000836	-	-
Sma3	Phosphoribosyl pyrophosphate synthetase, conserved site	IPR000842	-	-
Sma3	Ribose-phosphate diphosphokinase	IPR005946	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PTR8

Fln msg: Distance to subject end: 166 aas, your sequence is shorter than subject: 81 - 247

Fln protein: MELLVMVDACRRASARNITAVIPYFGYARADRKTLGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYDI

Protein Length: 82

Fln nts: ATGTGATGTATTTCTAGTACAGCCAACCTGTCCACCTGCCAATGAGAACTTA_-_ATGGAGTTACTTGTAATGGTTGATGCATGTCGTCGGGCATCTGCTCGAAATATAACTGCTGTCATTCCCTATTTTGGATATGCTCGAGCTGATCGTAAGACTCTAGGTCGTGAATCTATTGCTGCAAAACTTGTGGCAAACTTGATCACTGAAGCTGGTGCCAACCGTGTACTTGCTTGTGACTTGCATTCTGGGCAATCAATGGGGTACTTTGACATTCCGGTGGATCATGTCTATGACATT

Fln Alignment:

biogeco3_mira_c29276___MELLVMVDACRRASARNITAVIPYFGYARADRKTLGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVY
C0PTR8__________________MELLVMVDACRRASARNITAVIPYFGYARADRKTLGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVY

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
21	33	66			0.997452
22		66		33	0.997452
24			66	33	0.997452
138		75		25	0.996473
172	66		33		0.997454
179	66			33	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain