SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25830

Length: 309 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene25830
AATGTTTCCTTCGAGCCCACAAATACCAAGGCCAGAAGCTGATGCTGAATGAAAGGATACAGAGTTTAACTAAGCTACGCTCAGCTTTGGTAAAGGCAGAGGAACATCTTAAAAAGTTGCATAACAATACACCATATATGGAGTTTGAACACAAATTACAAGAAATGGGATTGGAAAAAGGGTGGGGAGACAATGCAGAGCATGTCCTGGATATGATTCATTTGCTGTTGGAGATCCTTCAGGCACCTGATCCATCAACTTTGGAAATGTTTTTAGGAAGGATTCCTATGGTTTTTAATGTTGTACATT

Ace file of the UniGene biog3_v1.0_unigene25830 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16106	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Sucrose synthase n=1 Tax=Pinus taeda RepID=A6N837_PINTA	-	-	89%
FL-Next	tr=Sucrose synthase; Pinus taeda (Loblolly pine).	-	-	83%
Blast2go	sucrose synthase	-	-	88%

Source	InterPros	Term	Type	Identity
Sma3	Sucrose synthase	IPR000368	-	-
Sma3	Glycosyl transferase, family 1	IPR001296	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Plastocyanin-like	IPR003245	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	Sucrose synthase, plant/cyanobacteria	IPR012820	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A6N837

Fln msg: Distance to subject end: 550 aas, your sequence is shorter than subject: 102 - 833

Fln protein: CFLRAHKYQGQKLMLNERIQSLTKLRSALVKAEEHLKKLHNNTPYMEFEHKLQEMGLEKGWGDNAEHVLDMIHLLLEILQAPDPSTLEMFLGRIPMVFNVVH

Protein Length: 103

Fln nts: AATGTTTCCTTCGAGCCCACAAATACCAAGGCCAGAAGCTGATGCTGAATGAAAGGATACAGAGTTTAACTAAGCTACGCTCAGCTTTGGTAAAGGCAGAGGAACATCTTAAAAAGTTGCATAACAATACACCATATATGGAGTTTGAACACAAATTACAAGAAATGGGATTGGAAAAAGGGTGGGGAGACAATGCAGAGCATGTCCTGGATATGATTCATTTGCTGTTGGAGATCCTTCAGGCACCTGATCCATCAACTTTGGAAATGTTTTTAGGAAGGATTCCTATGGTTTTTAATGTTGTACATT

Fln Alignment:

biogeco3_mira_rep_c29191___FLRAHKYQGQKLMLNERIQSLTKLRSALVKAEEHLKKLHNNTPYMEFEHKLQEMGLEKGWGDNAEHVLDMIHLLLEILQAPDPSTLEMFLGRIPMVFNVV
A6N837__________________FLRAHKYRGQKLMLNERIQSLPGLRSALVKTEEHLKKFPKDTPYAEFEYKLQELGLEKGWGENAEHALDTIHLLLEILQAPDPSNLETFLGRVPMVFNVV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain