SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25793

Length: 202 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene25793
GAAGAGAGTAGATATGTGCCCATTAAATTAATGCCTTCAGGGTTTGTTTTACTAAGGGACACCAAGCCATCAGAACCAGAAGTGTTTGTTTTGACTGATGCACCTTCGTCATTAGCATCATCTGGAAATTCATCAATCCCACAAGCACCTGCATCGGCTGTATCTGTTGAGGATGGAGAACCTCAACCACCACAACCTTTTG

Ace file of the UniGene biog3_v1.0_unigene25793 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9327	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	26S proteasome regulatory subunit N2 [Arabidopsis thaliana] gb\|AAC04490.1\| 26S proteasome regulatory subunit (RPN2), putative [Arabidopsis thaliana] gb\|AAM20712.1\| 26S proteasome regulatory subunit [Arabidopsis thaliana] gb\|AEC08730.1\| 26S proteasome regu	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	26s proteasome regulatory subunit n2	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	regulation of protein catabolic process	GO:0042176	Biological Process	83%
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	83%
Blast2go	regulation of catalytic activity	GO:0050790	Biological Process	83%
Blast2go	binding	GO:0005488	Molecular Function	83%
Blast2go	enzyme regulator activity	GO:0030234	Molecular Function	83%
Blast2go	proteasome regulatory particle, base subcomplex	GO:0008540	Cellular Component	83%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	83%
Blast2go	plasma membrane	GO:0005886	Cellular Component	83%
Blast2go	nucleus	GO:0005634	Cellular Component	83%
Blast2go	cytosol	GO:0005829	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit	IPR016642	-	-
Sma3	Proteasome/cyclosome, regulatory subunit	IPR002015	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQS7

Fln msg: STOP codon was not found. Distance to subject end: 4 aas, your sequence is shorter than subject: 67 - 773

Fln protein: EESRYVPIKLMPSGFVLLRDTKPSEPEVFVLTDAPSSLASSGNSSIPQAPASAVSVEDGEPQPPQPF

Protein Length: 68

Fln nts: GAAGAGAGTAGATATGTGCCCATTAAATTAATGCCTTCAGGGTTTGTTTTACTAAGGGACACCAAGCCATCAGAACCAGAAGTGTTTGTTTTGACTGATGCACCTTCGTCATTAGCATCATCTGGAAATTCATCAATCCCACAAGCACCTGCATCGGCTGTATCTGTTGAGGATGGAGAACCTCAACCACCACAACCTTTTG

Fln Alignment:

biogeco3_mira_rep_c29061___EESRYVPIKLMPSGFVLLRDTKPSEPEVFVLTDAPXXXXXXXXXSIPQAPASAVSVEDGEPQPPQPF
B8LQS7__________________EESRYVPIKLMPSGFVLLRDTKPSEPEVFVLTDAPSSLASSGNASIPQAPASAVSVEDGEPQPPQPF

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
69	25		75		0.996473
73	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain