SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25783

Length: 409 nt

UniGene Fasta

>biog3_v1.0_unigene25783
AATGTATCTTAATGGTCAACCAAGTTCACCAGCAAAATTACTGGGTACATTTGGATATTTTGCTCCTGAATATGCAATGATGGGAAGGGCTTCTTTAAAATCTGATGTTTTCAGCTTTGGAGTAGTTCTTTTGGAACTAATTAGTGGAAGACGTCCAATAGACATGTCTTTGCCTCAGGGACAACAAAGCCTTGTTATTTGGGCAAGTCCTTTCTTACAAGATGAGAAGAAGGTACTCAATGAAATAGTAGATCCAGCCTTAAAGAATGGTTTCCCAATAGAAGACATGTTAAAAATGGCTCAATTAGCAAGGGCGTGCTTACAAATGGATCCAGAGTCAAGACCTGTAATGACTGCAGTTGTGCAAGTTCTAGCCATGTTAATCCCAAATAATGCAAGGAAGAGTGCA

Ace file of the UniGene biog3_v1.0_unigene25783

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28705	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	Protein kinase family protein n=1 Tax=Glycine max RepID=C6ZRN0_SOYBN	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	52%
Blast2go	protein kinase	-	-	69%

Source	GOs	Term	Type	Identity
Blast2go	xylem development	GO:0010089	Biological Process	69%
Blast2go	GTPase binding	GO:0051020	Molecular Function	69%
Blast2go	endomembrane system	GO:0012505	Cellular Component	69%
Blast2go	plasma membrane	GO:0005886	Cellular Component	69%
Blast2go	endosome membrane	GO:0010008	Cellular Component	69%

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	von Willebrand factor, type A	IPR002035	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	Uncharacterised protein family UPF0197	IPR007915	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	Dil domain	IPR018444	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACW2

Fln msg: STOP codon was not found. Distance to subject end: 5 aas, your sequence is shorter than subject: 136 - 360

Fln protein: MYLNGQPSSPAKLLGTFGYFAPEYAMMGRASLKSDVFSFGVVLLELISGRRPIDMSLPQGQQSLVIWASPFLQDEKKVLNEIVDPALKNGFPIEDMLKMAQLARACLQMDPESRPVMTAVVQVLAMLIPNNARKSA

Protein Length: 137

Fln nts: AATGTATCTTAATGGTCAACCAAGTTCACCAGCAAAATTACTGGGTACATTTGGATATTTTGCTCCTGAATATGCAATGATGGGAAGGGCTTCTTTAAAATCTGATGTTTTCAGCTTTGGAGTAGTTCTTTTGGAACTAATTAGTGGAAGACGTCCAATAGACATGTCTTTGCCTCAGGGACAACAAAGCCTTGTTATTTGGGCAAGTCCTTTCTTACAAGATGAGAAGAAGGTACTCAATGAAATAGTAGATCCAGCCTTAAAGAATGGTTTCCCAATAGAAGACATGTTAAAAATGGCTCAATTAGCAAGGGCGTGCTTACAAATGGATCCAGAGTCAAGACCTGTAATGACTGCAGTTGTGCAAGTTCTAGCCATGTTAATCCCAAATAATGCAAGGAAGAGTGCA

Fln Alignment:

biogeco3_mira_rep_c29005___KLLGTFGYFAPEYAMMGRASLKSDVFSFGVVLLELISGRRPIDMSLPQGQQSLVIWASPFLQDEKKVLNEIVDPALKNGFPIEDMLKMAQLARACLQMDPESRPVMTAVVQVLAMLIPNNAR
D5ACW2__________________RVLGTFGYHAPEYAMTGQLSQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDK--VKQCVDSRLKGDYPPKAVAKMAAVAALCVQYEADFRPNMSIVVKALQPLL--NAR

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
103		66		33	0.997452
154	25		75		0.996473
155	25			75	0.996473
156		75		25	0.996473
157		75	25		0.996473
158	75			25	0.996473
237	20	80			0.995493
240		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain