SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25776

Length: 388 nt

UniGene Fasta

>biog3_v1.0_unigene25776
AGTTTGCTTCAAATGTAGTGTAAAATGTTTAGTGTTTGGAGGTCCCGTTGAGCGAGAATTTTTGATCAAAGAGATGCTTGGCTTAACAGATGAAAATGAGCCCCTGCAGGCAATGATGAAAGATCAATTTGCCAATTATGTTGTACAGAAGGTTTTAGAGACTTGTGATGATCAACAACGTGAACTAATTCTTTCTCGAATCAAAGTGCATTTGAATGCACTGAAAAAATCACATATGGAAAACATATTGTTGCTCGAGTTGAGAAGCTTGTTGCAGCTGGAGAAAGGCGTATTGGAACTCAATCAACATATCAGTCCTAAAATTCTAGGATACATATACATGAGGATTTGTACAGATGGGGAGGTTGGTTATAAACCATTTCCAATC

Ace file of the UniGene biog3_v1.0_unigene25776

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13167	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleic acid binding NABP [Medicago truncatula]	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	pumilio homolog 2-like	-	-	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	RNA binding	GO:0003723	Molecular Function	0.0	74%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Pumilio RNA-binding repeat	IPR001313	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Domain of unknown function DUF632	IPR006867	-	-
Sma3	Domain of unknown function DUF630	IPR006868	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3		IPR011523	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Nucleic acid binding NABP	IPR012940	-	-
Sma3	Amino acid transporter, transmembrane	IPR013057	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AD88

Fln msg: Overlapping hits, possible frame ERROR between 229 and 223,

Fln protein: MLGLTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNAxxxxTYGKHIVARVEKLVAAGERRIGTQSTYQS*

Protein Length: 84

Fln nts: AGTTTGCTTCAAATGTAGTGTAAAATGTTTAGTGTTTGGAGGTCCCGTTGAGCGAGAATTTTTGATCAAAGAG_-_ATGCTTGGCTTAACAGATGAAAATGAGCCCCTGCAGGCAATGATGAAAGATCAATTTGCCAATTATGTTGTACAGAAGGTTTTAGAGACTTGTGATGATCAACAACGTGAACTAATTCTTTCTCGAATCAAAGTGCATTTGAATGCAxxxxxxxxxxxxACATATGGAAAACATATTGTTGCTCGAGTTGAGAAGCTTGTTGCAGCTGGAGAAAGGCGTATTGGAACTCAATCAACATATCAGTCCTAA___AATTCTAGGATACATATACATGAGGATTTGTACAGATGGGGAGGTTGGTTATAAACCATTTCCAATC

Fln Alignment:

biogeco3_mira_rep_c28982___MLGLTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALxxITYGKHIVARVEKLVAAGERRIGTQSTYQS
D5AD88__________________MLGLTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALxxYTYGKHIVARVEKLVAAGERRIGTQSTYQS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
270		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain