SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25748

Length: 436 nt

UniGene Fasta

>biog3_v1.0_unigene25748
CAATATTTCATCCATTGAGCGCTTAAAACGAGCAATCGAACGCAGTCAAGACAGGCTAGAAAAACTACAGATGTCTGCAGGTGTAAAATCTGTAAATTGGGTGGTCAAGTGAAGGATGTGCAGGCTCCTGTAAGTGCAGGAAATGGAGAATTTCTCTTGCAGTTGGCAATTGGTAAGCCAAGTTTATCCTATTCTGCAATTTTGGATACCGGGAGTGACCTGACATGGACACAGTGCATGCCTTGCAGTGATTGTTATAAACAGCCAACTCCAATCTATGATCCTTCCATGTCCTCCACTTACGGTACTGTCTCCTGCAAAAGCTCTATGTGCTTGGCTCTTCCCGCCTCGGCTTGCACTAGTGCAACGTGCGAGTACTTGTACACTTATGTGATTACTCCTCAACGCAGGGAATCCTTTCATATGAGACCACATT

Ace file of the UniGene biog3_v1.0_unigene25748

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4277	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	Aspartic proteinase nepenthesin-1, putative n=1 Tax=Ricinus communis RepID=B9SA95_RICCO	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	aspartic proteinase nepenthesin-1-like	-	-	67%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Aspartic endopeptidases.	EC:3.4.23.-	-	0.0	67%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	67%
Blast2go	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	67%
Blast2go	plastid	GO:0009536	Cellular Component	67%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase A1	IPR001461	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NXW9

Fln msg: Separated hits, possible frame ERROR between 94 and 106, and overlapping frame ERROR between 390 and 366, Distance to subject end: 250 aas, your sequence is shorter than subject: 145 - 460

Fln protein: NISSIERLKRAIERSQDRLEKLQMSAGVKSxxxxxQVKDVQAPVSAGNGEFLLQLAIGKPSLSYSAILDTGSDLTWTQCMPCSDCYKQPTPIYDPSMSSTYGTVSCKSSMCLALPASACTxxxxxxxxxxxDYSSTQGILSYETT

Protein Length: 146

Fln nts: CAATATTTCATCCATTGAGCGCTTAAAACGAGCAATCGAACGCAGTCAAGACAGGCTAGAAAAACTACAGATGTCTGCAGGTGTAAAATCTGTxxxxxxxxxxxxTCAAGTGAAGGATGTGCAGGCTCCTGTAAGTGCAGGAAATGGAGAATTTCTCTTGCAGTTGGCAATTGGTAAGCCAAGTTTATCCTATTCTGCAATTTTGGATACCGGGAGTGACCTGACATGGACACAGTGCATGCCTTGCAGTGATTGTTATAAACAGCCAACTCCAATCTATGATCCTTCCATGTCCTCCACTTACGGTACTGTCTCCTGCAAAAGCTCTATGTGCTTGGCTCTTCCCGCCTCGGCTTGCACTAGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGATTACTCCTCAACGCAGGGAATCCTTTCATATGAGACCACATT

Fln Alignment:

biogeco3_mira_rep_c28837___NISSIERLKRAIERSQDRLEKLQMSAG-VKSVxxxxQVKDVQAPVSAGNGEFLLQLAIGKPSLSYSAILDTGSDLTWTQCMPCSDCYKQPTPIYDPSMSSTYGTVSCKSSMCLALPASACTSAxxxxxxxxCDYSSTQGILSYET
A9NXW9__________________NISSTERFKRAIKRSQDRLEKLQMSVDEVKAVxxxxEVKAVEAPVYAGNGEFLMKMAIGTPSLSFSAILDTGSDLTWTQCKPCTDCYPQPTPIYDPSQSSTYSKVPCSSSMCQALPMYSCSGAxxxxxxxxGDQSSTQGILSYES

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain