SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25689

Length: 336 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene25689
CGGTAGCAGATTATTAGTTGCTGTTCTCTTGTGAGTCGATCTGTTCAATCTCTTGTTGTTCCGAACTCCATATTTTCGAGTTTGTTCTCATAAAGAGTTTTCATTATTATATTGCAATGGCCACCGTCAGTGCATCATTAATGGCCATGAAGGGAACATCCCTCTTACAATGGAGGCCAGCAGAGAGGTCATCAGGGTTTGTTGAAACCAGAAATACGGTTATGCCAGCTTCCAGGGGTCTTCGAGTGAAGTGTATGGCAGAGGTAGATCCACAACCAAAGGACTCTTCCACGGCCTCCCCTCAGTCCACAACCCCCATACATCCTCAGTAACATT

Ace file of the UniGene biog3_v1.0_unigene25689 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15329	12/13

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chloroplast ELIP early light-induced protein n=2 Tax=Vitis vinifera RepID=D6QST4_VITVI	-	-	3.00004e-41	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Blast2go	early light-inducible protein	-	-	0.0	84%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUC7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 120 aas, your sequence is shorter than subject: 72 - 193

Fln protein: MATVSASLMAMKGTSLLQWRPAERSSGFVETRNTVMPASRGLRVKCMAEVDPQPKDSSTASPQSTTPIHPQ*

Protein Length: 73

Fln nts: CGGTAGCAGATTATTAGTTGCTGTTCTCTTGTGAGTCGATCTGTTCAATCTCTTGTTGTTCCGAACTCCATATTTTCGAGTTTGTTCTCATAAAGAGTTTTCATTATTATATTGCA_-_ATGGCCACCGTCAGTGCATCATTAATGGCCATGAAGGGAACATCCCTCTTACAATGGAGGCCAGCAGAGAGGTCATCAGGGTTTGTTGAAACCAGAAATACGGTTATGCCAGCTTCCAGGGGTCTTCGAGTGAAGTGTATGGCAGAGGTAGATCCACAACCAAAGGACTCTTCCACGGCCTCCCCTCAGTCCACAACCCCCATACATCCTCAGTAACATT

Fln Alignment:

biogeco3_mira_rep_c28363___MATVSASLMAMKGTSLLQWRPAERSSGFVETRNTVMPASRGLRVKCMAEVDPQPKDSSTASPQSTTPIHP
A9NUC7__________________MAAVNASLMTMKGTSLLQWRPAERSTALGEIRNTAMPASRGLRVKCMAEADPQPKDSFTPSTQSTTPLSP

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
149	12	87			0.992554
150	12	87			0.992554
152		87	12		0.992554
298	87			12	0.992554
303		85		14	0.993533
334	66	33			0.997476

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain