SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25674

Length: 654 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene25674 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25351	22/22

Source	Descriptions	Term	Type	Identity
AutoFact	DCD (Development and Cell Death) domain protein [Arabidopsis thaliana] dbj\|BAB01090.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAL24231.1\| AT3g27090/MOJ10_18 [Arabidopsis thaliana] gb\|AAM65351.1\| AT3g27090/MOJ10_18 [Arabidopsis thaliana] gb\|AEE7	-	-	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	b2 protein	-	-	95%

Source	InterPros	Term	Type	Identity
Sma3	Nucleotidyl transferase domain	IPR002934	-	-
Sma3		IPR013089	-	-
Sma3	Development/cell death domain	IPR013989	-	-

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
145	33			66	0.997452
205	25		75		0.996473
206	75			25	0.996473
233	20	80			0.995493
236	80		20		0.995493
237	80			20	0.995493
397		14		85	0.993533
416	20		80		0.995493
417		20		80	0.995493
418	20			80	0.995493
419			80	20	0.995493
459	22		77		0.999999
462		77		22	0.999999
463			77	22	0.999999
481	28		71		1.0
503	20	80			0.995493
505	20		80		0.995493
575		33	66		0.997452
577	66			33	0.997452
578			66	33	0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain