SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25670

Length: 679 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene25670 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16350	33/34
SustainPine v2.0	sp_v2.0_unigene78551	1/34

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S acidic ribosomal protein P1 [Zea mays] gb\|AAB71079.1\| acidic ribosomal protein P1a [Zea mays] gb\|ACG31544.1\| 60S acidic ribosomal protein P1 [Zea mays] gb\|ACR38189.1\| unknown [Zea mays]	-	-	2.0e-18	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Blast2go	60s acidic ribosomal protein p1	-	-	8.6505e-30	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein 60S	IPR001813	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
91	75		25		0.996473
201	90			10	0.90298
202	90			10	0.90298
225	11			88	0.923564
226		11	88		0.923564
227	11	88			0.923564
239	87	12			0.992554
240	12		87		0.992554
241		75		12	0.975346
242	12			87	0.992554
243		14	85		0.993533
245	85			14	0.993533
254	14	85			0.993533
258		85		14	0.993533
302			80	20	0.995493
303			80	20	0.995493
305	25		75		0.996473
308			80	20	0.995493
309		80		20	0.995493
523	16			83	0.999991
527		83		16	0.999991
533		10	90		0.90298
535			90	10	0.90298
536		90		10	0.90298
578		10		90	0.902987
579	10			90	0.902989
619	14	85			0.993537
664	80		20		0.995493

SSRs (tot: 2)

Start position	End position	Sequence	Length
302	317	GCA GCA GCA GCA GCA G	16
321	337	CAC CAC CAC CAC CAC CA	17

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain