SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25661

Length: 1074 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene25661 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15925	2/38
SustainPine v2.0	sp_v2.0_unigene15988	34/38
SustainPine v2.0	sp_v2.0_unigene16073	1/38

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	f-box lrr-repeat protein	-	-	57%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMV2

Fln msg:

Fln protein: MSSSMEIATTDRGLLSHILMRLSGPQDMFSASMVCTAWYDVLASAAQTLTISSRVRVRLPSLLSRFNHVKRLDLSRCNDQLQDEDLRMASEALKNLVFLSLGNLDQPQECISNLGFVGFVNNCTKLEHVALISISNLQDSGIEAMTRVCSRLNTVNLVNCRSLSDDALKSLKNCENIQELGLKGQFRFTPPGLVKIGESCPTLLRLSLELEPTVDITQALQSLAIYCRNLQELSLKF*

Protein Length: 239

Fln nts: CAAGCA_-_ATGAGTAGCAGCATGGAGATTGCAACGACTGACAGAGGACTATTGTCTCACATCTTAATGCGTCTATCGGGGCCACAGGATATGTTCTCAGCATCCATGGTGTGCACAGCCTGGTACGACGTGCTTGCGTCGGCAGCCCAGACGCTCACGATCAGTTCACGAGTACGAGTACGCCTCCCTTCTCTCCTTTCCCGCTTCAATCACGTTAAGCGCTTGGATCTTTCTCGGTGCAATGATCAATTGCAGGACGAAGATCTCCGGATGGCCTCTGAAGCCCTTAAAAATCTAGTTTTCTTATCATTAGGGAATCTTGATCAACCACAGGAATGCATTTCAAATCTAGGGTTTGTGGGTTTTGTGAATAATTGTACTAAGCTCGAGCATGTTGCCTTGATTTCCATATCCAATTTGCAGGATTCAGGTATTGAGGCCATGACTAGGGTTTGTAGCAGGCTTAATACTGTCAATCTCGTGAATTGTAGGAGTTTGTCTGATGATGCCCTGAAGAGCCTTAAAAACTGTGAGAATATCCAAGAATTAGGTTTAAAGGGTCAATTTAGATTCACTCCTCCTGGTTTGGTAAAAATAGGTGAGAGTTGCCCGACGCTTCTGAGGCTGTCACTCGAGCTTGAGCCTACCGTCGACATTACCCAAGCGCTCCAGTCTCTGGCCATCTACTGCCGCAACCTGCAGGAATTGTCTTTGAAGTTCTGA___CGTGGGGAATTGAGGAAGTCATGAACGTTATAATTTTTAGTTTGGTCACAGCTTCTTTATCATGTAATTGGATTCAGTTTATGGCTTTGCTTCTATTTTGGTAATTATTTGCATCTGATATAGCAGCAGGTAAGTAGTTGTGAAGGGGTATATTCAGAGACCGAAAACCATCATGGAACATTTTACTGTTTACATCTGGAATGGATGGCATCTCCTTTGGTTCCATATCAATTCCACGTATTTGATATAGCAACATAGATGTAAGATGTGCAGAGCACAATAATTGTTTCAACTATTTAAACTCGCCAATACTTTATGTAATGCATAATGCATATTTGTAGACTCATTAGCTGG

Fln Alignment:

biogeco3_mira_rep_c28000___MSSSMEIATTDRGLLSHILMRLSGPQDMFSASMVCTAWYDVLA-SAAQTLTIXXXXXXXXXXXXXRFNHVKRLDLSRCNDQLQDEDLRMASEALKNLVFLSLGNLDQPQECISNLGFVGFVNNCTKLEHVALISISNLQDSGIEAMTRVCSRLNTVNLVNCRSLSDDALKSLKNCENIQELGLKGQFRFTPPGLVKIGESCPTLLRLSLELEPTVDITQALQSLAIYCRNLQELSLKF
A9NMV2__________________MESSMEIATSDRGLLSHILTRLSEPQDLLSASMVCTVWNDVLTRAAAKKLTIRSRVRLPSVLSR--FKHVKHLNLSMCIDQLQDQDLEMASESLKNLSILTLGNPDEPQECISNLGFVGFVNNCTMLEHVALTFIPNLQDSGIEAMTRVCNRLSAINLVNCRNLSDDALKSLKNCENIQELGLKGHFGFTPSGLVKIGENCPTLLKLSLELEPSVDITLALQSLATYCRNLQELSLKF

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
526	16	83			0.994512
527		75		25	0.996473
528		75	25		0.996473
664		85		14	0.993533
665	14	85			0.993533
667			85	14	0.993533
690			83	16	0.994512
738	14			85	0.993533
742	85			14	0.993533
766		14	85		0.993533
769		85		14	0.993533
777	14	85			0.993533
778	14	85			0.993533
781	85			14	0.993533
850	11			88	0.923564
888	14		85		0.993535
890	14		85		0.993535
891			85	14	0.993535
892			85	14	0.993535
914	12	87			0.992555
995		14		85	0.993539
1000	83		16		0.99452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain