SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25651

Length: 1125 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene25651 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22208	11/123
SustainPine v2.0	sp_v2.0_unigene55536	111/123

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L10 n=2 Tax=Pinaceae RepID=RL10_PINTA	-	-	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	60s ribosomal protein l10-like	-	-	95%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L10e	IPR001197	-	-
Sma3	Ribosomal protein L10e/L16	IPR016180	-	-
Sma3	Ribosomal protein L10e, conserved site	IPR018255	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPT9

Fln msg:

Fln protein: MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGAKKRLADEFPFCVHLVSWEKENVTSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCRDNHSNHAQEALRRAKFKFPGRQKIIVSRKWGFTKYTRADYLKWKSENRIVPDGVNAKLLGCRGPLSNRKPGQAFLKPAVMLSSDLVA*

Protein Length: 230

Fln nts: AATGTCCTCACTCTAACCAGTTTTCTAAGTTTAATATACATATACCTTCAACGATAGTGTAACCTGAGGACAAACACAGCCCAAGTTGCGTAAGCCCTAGGACTTCTATCAAACATTGCCGTCTCCAGGACTATAAAGTGACCATTTGGACGTAGCCAACGGGATTTCTGAAGTTTCAAGAGCAAGCTCTTCATTTTCAATCCAGCTACAAGATTTATTAGGTTCAGTGATTCTTTCTACGCATCCGAAAGTCGGGTACTTCCAGCAGATTTC_-_ATGGGGAGACGTCCAGCGAGATGCTATCGTCAGATAAAGAACAAACCCTATCCGAAATCTCGATACTGTCGTGGTGTTCCGGATCCCAAAATCCGCATATACGATGTCGGTGCGAAGAAGAGATTGGCCGACGAGTTCCCTTTCTGTGTCCACCTGGTGAGTTGGGAGAAGGAAAATGTAACGAGCGAGGCACTGGAAGCGGCTCGTATTGCATGTAACAAATACATGGCTAAGTTCGCCGGAAAGGATGCATTTCACCTACGAGTTCGCGTTCATCCATTCCATGTTCTCCGTATTAACAAGATGCTTTCATGCGCTGGAGCCGATAGGCTGCAAACTGGAATGAGAGGAGCATTTGGAAAACCTCAGGGAACATGTGCACGTGTTGCCATAGGTCAAGTCCTCCTTTCAGTACGATGCCGGGACAATCACTCAAATCATGCTCAAGAAGCTCTGCGTCGTGCCAAGTTCAAGTTCCCTGGTAGACAGAAAATTATCGTGAGCAGAAAATGGGGTTTCACCAAGTACACCAGAGCTGACTACTTGAAGTGGAAGTCAGAAAACAGAATTGTTCCTGATGGTGTGAATGCCAAGTTGCTTGGTTGCCGAGGTCCATTATCCAATCGAAAACCTGGGCAGGCATTTCTGAAGCCTGCCGTTATGTTGTCATCTGATCTAGTTGCTTAG___ATTAGTGCTTTAGTATGGTTGATAAACAGAGAACCTAAAAAGTTTGGCCTTAGTACATTAAGGCATCGATTGGGTCAATCCACAATTTTTTGATGACTGCTTATTTTTATTAAGATATTTGTGAACATGTTTATCATATCGTTCCTGATATTTTTATTCATGGTT

Fln Alignment:

biogeco3_mira_rep_c27881___MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGAKKRLADEFPFCVHLVSWEKENVTSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCRDNHSNHAQEALRRAKFKFPGRQKIIVSRKWGFTKYTRADYLKWKSENRIVPDGVNAKLLGCRGPLSNRKPGQAFLKPAVMLSSDLVA
A9NPT9__________________MGRRPARCYRQIKNKPYPKSRYCRGVPDSKIRIYDVGAKKRLADEFAFCVHLVSWEKENVTSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCRDNHSNHAQEALRRAKFKFPGRQKIIVSRKWGFTKFTRADYLKWKSESRIVPDGVNAKLLGCRGPLSNRKPGQAFLKPALVSSSDIVA

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
271	33	33			0.997753
272	66		33		0.997452
273		33		66	1.0
274	66		33		0.997452
275		66		33	0.997452
292			25	75	0.996473
293		75		25	0.996473
302	20		80		0.995493
305		80		20	0.995493
433	6			93	0.999264
653			91	2	0.99441
656	93			6	0.99903
662	3		90	6	0.997544
663		90		9	1.0
695	9	85		4	0.999726
698	10	89			0.999919
710		88		11	0.999937
711		88		11	0.999937
733		80		20	0.999999
895	11			88	0.999952
896	11			88	0.999952
897		88		11	0.999952
899			88	11	0.999952
917		87		12	0.999964
982		62	37		1.0
983		57	42		1.0
984	42	57			1.0
985	42		57		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain