SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25646

Length: 745 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene25646 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene12679	17/88
SustainPine v2.0	sp_v2.0_unigene15863	2/88
SustainPine v2.0	sp_v2.0_unigene15972	2/88
SustainPine v2.0	sp_v2.0_unigene60402	66/88

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cysteine proteinase inhibitor n=3 Tax=Glycine max RepID=O04720_SOYBN	-	-	8.0e-31	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	cysteine inhibitor 1	-	-	0.0	79%

Source	InterPros	Term	Type	Identity
Sma3	Proteinase inhibitor I25, cystatin	IPR000010	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Cystatin-related, plant	IPR006525	-	-
Sma3	Ribosomal protein L37ae/L37e, N-terminal	IPR011331	-	-
Sma3	Proteinase inhibitor I25, cystatin, conserved site	IPR018073	-	-

Full-Lengther Next Prediction

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
63	83		16		0.994512
64		83		16	0.994512
71	10			90	0.90298
72	10		90		0.90298
74			10	90	0.90298
342		87		12	0.992554
612	3	88		7	0.998862
613	7	88		3	0.998862
614	88	7			0.999079
688	10		90		0.90298
703		10		90	0.90298
704		10		90	0.90298
705		10		90	0.90298
706	90	10			0.90298
707		10		90	0.90298
710	88	11			0.923564
718	40			60	1.0
720	33	33	33		0.997753
721		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain