SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25643

Length: 1227 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene25643

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15732	62/158
SustainPine v2.0	sp_v2.0_unigene60338	95/158
SustainPine v2.0	sp_v2.0_unigene60443	1/158

Source	Descriptions	Term	Type	Identity
AutoFact	ADP-ribosylation factor [Medicago sativa] emb\|CAI29265.1\| ADP-ribosylation factor 1 [Medicago truncatula]	-	-	99%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	adp-ribosylation factor	-	-	99%

Source	GOs	Term	Type	Identity
Blast2go	protein ADP-ribosylation	GO:0006471	Biological Process	99%
Blast2go	vesicle-mediated transport	GO:0016192	Biological Process	99%
Blast2go	intracellular protein transport	GO:0006886	Biological Process	99%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	99%
Blast2go	intracellular membrane-bounded organelle	GO:0043231	Cellular Component	99%
Blast2go	cytoplasmic part	GO:0044444	Cellular Component	99%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PPL2

Fln msg:

Fln protein: MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA*

Protein Length: 183

Fln nts: CAGGACCTTTGCCCCGCAAAAGGCGGTTTGTTCACATGCAACGCCATCACGGTAGCAGACTACTGTAACCACAGTCAACCGTCCGATCGACGAGCGAAGGAACCTATTTCTTCCCGCAAGTCTCTATATCCAGCCCTCCTCCTCCCCTTTTCGGCAGCAGTGCTAGGTGTTCGAGAGGCGTCTCAGATCTCTTTGCGGGGAGCCATTCTTGTCCCCTCGAATCTCAGATCTGACCCTTCAACTCGGGATCTCTAACAGGTGGTCAAG_-_ATGGGACTCACTTTTACCAAGCTTTTTAGTCGGCTCTTCGCAAAGAAGGAAATGCGCATTCTGATGGTTGGTCTCGATGCCGCTGGTAAGACGACCATCTTGTATAAGCTGAAGCTGGGAGAAATCGTTACGACCATCCCTACCATCGGATTCAATGTGGAAACCGTCGAGTACAAGAACATCAGCTTCACTGTGTGGGATGTTGGGGGTCAGGACAAGATCCGTCCACTTTGGAGACACTACTTCCAAAATACTCAGGGTCTCATCTTTGTGGTTGATAGCAATGATAGAGACCGTGTTGTAGAAGCAAGGGATGAACTACATAGAATGCTGAATGAGGATGAACTACGTGATGCTGTATTGCTTGTGTTCGCAAATAAGCAAGATCTTCCAAATGCTATGAATGCTGCAGAGATAACTGACAAACTTGGGCTGCATTCCCTCAGGCAGCGCCACTGGTATATCCAAAGCACTTGTGCCACTTCTGGCGAGGGCTTGTATGAGGGCTTGGATTGGCTCTCTAACAACATTGCAAACAAGGCTTGA___AGAAATATGGTGAACTGGGTTCCTGGAATTTTGTAGGGCAATGTCGTCTTATTTCATTTTTGTCAGAGACAGTTTGAAGAAATAAGTGCAGTCAAACTGACTTTTGACTACTATTCAATTTCTTCTATGGGTTTGATTGTGCCAATCTGCTAGGAATGAACTAATTTATATATAGCTCATTATGCTTAAATGGCAAAGCATGAGTAGTTATTATAAATGTATTTGATGATTATGATATTGCCTTTTGTGTGGGGAGCATAGACATTACTATAGGAATGTTCCGGCTGATTTGAAACTTGTATTCTTATTTCTAGCTTTATTGTCTCATATTACACTCAAATTCATTCTACCAGATAATAAATACACAGGTTGGTTTGAATTTTGGTATACATTATTGAAATTCTTTTAGACATT

Fln Alignment:

biogeco3_mira_rep_c27753___MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA
C0PPL2__________________MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
815			94	5	0.997984
816			94	5	0.997984
829		6		93	0.99903
830	6		93		0.999153
831			90	6	0.997073
865	9			90	0.999872
867	9		90		0.999872
1093	91			8	0.999807
1107	9			90	0.999872
1108		9	90		0.999872
1193	11			88	0.923564
1194		11	88		0.923564
1195	11		88		0.923564
1200		33		33	1.0
1202	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain