SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25573

Length: 311 nt

UniGene Fasta

>biog3_v1.0_unigene25573
AATGTTCTAATGTGCAATATCGGCAGCAGGAAATTGAGGCTCCACATCTTACAGGAAACTTTCTGAAGCTTTTTGTGTGGATTGTGGAATCTCGATTGTTTGGCCGTGCAGTCTTGTCATTTGTAAAGCGCAAGAACAAAGTTCCACAGATACTGGAACATACAGGGATTCCTGAGACACCTATGTATTTCCCAGAGTTTCCACCTCAAGACTTAGAGAATGCAGTGAAGTGTGTGGATGAAGATACTCTGCCTACCTTGCGTGTGGCATTTGCATTGGAATGCCTGCCTGCCTACGATTCTCCAATCACT

Ace file of the UniGene biog3_v1.0_unigene25573

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Glutamyl-tRNA(Gln) amidotransferase subunit A, putative n=1 Tax=Ricinus communis RepID=B9RX50_RICCO	-	-	63%
FL-Next	tr=Putative uncharacterized protein Sb06g000410; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	53%
Blast2go	n-acylethanolamine amidohydrolase	-	-	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ligases, Forming carbon-nitrogen bonds, Carbon--nitrogen ligases with glutamine as amido-N-donor.	EC:6.3.5.-	-	0.0	76%

Source	KEGGs	Term	Type	Identity
Blast2go	Tetracycline biosynthesis	00253		76%
Blast2go	Biosynthesis of secondary metabolites	01110		76%
Blast2go		EC:3.5.1.6-	-	76%
Blast2go	Amidase.	EC:3.5.1.4	-	76%

Source	KEGGs	Term	Identity
Blast2go	Arginine and proline metabolism	00330	76%
Blast2go	Phenylalanine metabolism	00360	76%
Blast2go	Tryptophan metabolism	00380	76%
Blast2go	Cyanoamino acid metabolism	00460	76%
Blast2go	Aminobenzoate degradation	00627	76%
Blast2go	Styrene degradation	00643	76%
Blast2go	Biosynthesis of plant hormones	01070	76%

Source	GOs	Term	Type	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	76%
Blast2go	carbon-nitrogen ligase activity, with glutamine as amido-N-donor	GO:0016884	Molecular Function	76%
Blast2go	N-(long-chain-acyl)ethanolamine deacylase activity	GO:0047412	Molecular Function	76%
Blast2go	transferase activity	GO:0016740	Molecular Function	76%
Blast2go	amidase activity	GO:0004040	Molecular Function	76%
Blast2go	plasma membrane	GO:0005886	Cellular Component	76%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	76%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Amidase	IPR000120	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: C5YB91

Fln msg: Distance to subject end: 490 aas, atg_distance in limit (1-15): atg_distance = 9, W2: There is no M at the beginning, your sequence is shorter than subject: 103 - 601

Fln protein: CSNVQYRQQEIEAPHLTGNFLKLFVWIVESRLFGRAVLSFVKRKNKVPQILEHTGIPETPMYFPEFPPQDLENAVKCVDEDTLPTLRVAFALECLPAYDSPIT

Protein Length: 104

Fln nts: A_-_ATGTTCTAATGTGCAATATCGGCAGCAGGAAATTGAGGCTCCACATCTTACAGGAAACTTTCTGAAGCTTTTTGTGTGGATTGTGGAATCTCGATTGTTTGGCCGTGCAGTCTTGTCATTTGTAAAGCGCAAGAACAAAGTTCCACAGATACTGGAACATACAGGGATTCCTGAGACACCTATGTATTTCCCAGAGTTTCCACCTCAAGACTTAGAGAATGCAGTGAAGTGTGTGGATGAAGATACTCTGCCTACCTTGCGTGTGGCATTTGCATTGGAATGCCTGCCTGCCTACGATTCTCCAATCACT

Fln Alignment:

biogeco3_mira_c27619___VQYRQQEIEAPHLTGNFLKLFVWIVESRLFGRAVLSFVKRKNKVPQILEHTGIPETPMYFPEFPPQDLENAVKCVDEDTLPTLRVAFALECLPAYDSPI
C5YB91__________________VRYKSPTLQAPHLTGFSLRAFLWLMESSLLGPLVTSVLKSQNNMPQMLQQTVIPERPMYYPEFPPQDPEPEVVLVDEDRDPVERVDEALQCLPQYDPSI

SSRs (tot: 1)

Start position	End position	Sequence	Length
282	294	TGCC TGCC TGCC T	13

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain