SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25567

Length: 214 nt

UniGene Fasta

>biog3_v1.0_unigene25567
AATGTCATACGGATGACATGGAATGTGTGGCCGAGCTCCAAGAATCGAAGTTAGCAAATGTGTAAATTCCGCTGGCGGCCGTCTACAGCCCGCTCCGCACGGACGCCGGAGATGCCCGTCCTGCCCTACCCTCCTCTCCGCTGCAAATCCTGTCTCTGCATTCTAAACCCTTACAGTCGCGTGGATTACACGGCCAAGATCTGGCTATGCTCTG

Ace file of the UniGene biog3_v1.0_unigene25567

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2116	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	protein transport protein SEC23 [Arabidopsis thaliana] dbj\|BAB02785.1\| protein transport protein Sec23 [Arabidopsis thaliana] gb\|AAO22730.1\| putative transport protein [Arabidopsis thaliana] gb\|AAO50656.1\| putative transport protein [Arabidopsis thaliana]	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	48%
Blast2go	protein transport protein sec23	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	intracellular protein transport	GO:0006886	Biological Process	83%
Blast2go	ER to Golgi vesicle-mediated transport	GO:0006888	Biological Process	83%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	83%
Blast2go	transporter activity	GO:0005215	Molecular Function	83%
Blast2go	COPII vesicle coat	GO:0030127	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Gelsolin domain	IPR007123	-	-
Sma3	Sec23/Sec24 beta-sandwich	IPR012990	-	-
Sma3	Sec23/Sec24, helical domain	IPR006900	-	-
Sma3	Sec23/Sec24, trunk domain	IPR006896	-	-
Sma3	Zinc finger, Sec23/Sec24-type	IPR006895	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: F6I4C2

Fln msg: Distance to subject end: 690 aas, atg_distance in limit (1-15): atg_distance = 12, your sequence is shorter than subject: 67 - 771

Fln protein: MTWNVWPSSKNRS*QMCKFRWRPSTARSARTPEMPVLPYPPLRCKSCLCILNPYSRVDYTAKIWLCS

Protein Length: 68

Fln nts: AATGTCATACGG_-_ATGACATGGAATGTGTGGCCGAGCTCCAAGAATCGAAGTTAGCAAATGTGTAAATTCCGCTGGCGGCCGTCTACAGCCCGCTCCGCACGGACGCCGGAGATGCCCGTCCTGCCCTACCCTCCTCTCCGCTGCAAATCCTGTCTCTGCATTCTAAACCCTTACAGTCGCGTGGATTACACGGCCAAGATCTGGCTATGCTCTG

Fln Alignment:

biogeco3_mira_c27613___IRMTWNVWPSSKNRS*QMCKFRWRPSTARSARTPEMPVLPYPPLRCKSCLCILNPYSRVDYTAKIWLC
F6I4C2__________________VRMTWNVWPRTKVEA-SKCVIPIAASVSPIRSHPDIPTLPYAPLRCKTCISLLNPFCRVDFAAKIWIC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain