SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25509

Length: 215 nt

UniGene Fasta

>biog3_v1.0_unigene25509
AATGTCTGTGCGACGTGGGATATGGATTTGTCCTTCCCAAGAGTCAAGAAAGTGGCAGCCAGGCTGCCTGGAAAAACTGCTACGGATGTTAGTAAGCATTATGAAGATCTCGTGGAAGATGTTACTTGTGATGAAGCTGGCCGCGTTGCCCTATCCACGTACAGTAACTCTTCCTGTTCACTTGAATGGTTAGCAGAAAATCAGGCGCTATGCAC

Ace file of the UniGene biog3_v1.0_unigene25509

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27602	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	MYB transcription factor (Fragment) n=1 Tax=Malus x domestica RepID=E7BJY5_MALDO	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	48%
Blast2go	dna binding	-	-	75%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Parathyroid hormone/parathyroid hormone-related protein	IPR001415	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Myb DNA-binding domain, plants	IPR006447	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3		IPR015609	-	-
Sma3	Myb-like domain	IPR017877	-	-
Sma3	SANT domain	IPR017884	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-
Sma3	DNA methylase, N-4 cytosine-specific, conserved site	IPR017985	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKB7

Fln msg: Distance to subject end: 180 aas, your sequence is shorter than subject: 71 - 270

Fln protein: NVCATWDMDLSFPRVKKVAARLPGKTATDVSKHYEDLVEDVTCDEAGRVALSTYSNSSCSLEWLAENQALC

Protein Length: 72

Fln nts: AATGTCTGTGCGACGTGGGATATGGATTTGTCCTTCCCAAGAGTCAAGAAAGTGGCAGCCAGGCTGCCTGGAAAAACTGCTACGGATGTTAGTAAGCATTATGAAGATCTCGTGGAAGATGTTACTTGTGATGAAGCTGGCCGCGTTGCCCTATCCACGTACAGTAACTCTTCCTGTTCACTTGAATGGTTAGCAGAAAATCAGGCGCTATGCAC

Fln Alignment:

biogeco3_mira_c27541___RVKKVAARLPGKTATDVSKHYEDLVEDVTCDEAGRVALSTY
B8LKB7__________________RWEKIASAVPGKSPAEVKRHYEILVEDIASIEAGRVPIPSY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain