SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25503

Length: 393 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene25503
TGAGATAGCGGAATATATCCATCGCAATGAATCCTCGATGCAGTGGGCAGCTGGAGATGGGCCAAATTCACGGTCTGATGGAAATGGGAAGGCTGACCGTAGTGATTCTATGGGAACAGAAGCTCGAACACGAACAAGATTTTGGCGTAGAAGGGGAAGAGTACGAAGGCTGAAGTACACTTGGAAGTCTGCTGGTCATCCCTCATAAAAAAGCGAATTGCTGATAGCAAAGATCAGCCATGTAGGCAGTTTACACCATGTGATTGTCAATCCATGTGTGGAAAGCAATGTCCCTGCCTACGTAGTGGGACTTGTTGTGAAAAATACTGTGGGTGTTCGAAAGGCTGCAAGAATCGTTTCCGAGGATGTCACTGTGCAAAGAGTCAATACATT

Ace file of the UniGene biog3_v1.0_unigene25503 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3877	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	histone-lysine N-methyltransferase CLF [Arabidopsis thaliana] sp\|P93831.2\|CLF_ARATH RecName: Full=Histone-lysine N-methyltransferase CLF; AltName: Full=Polycomb group protein CURLY LEAF; AltName: Full=Protein INCURVATA 1; AltName: Full=Protein SET DOMAIN	-	-	64%
FL-Next	sp=Histone-lysine N-methyltransferase CLF; Arabidopsis thaliana (Mouse-ear cress).	-	-	56%
Blast2go	polycomb protein ez1	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Histone-lysine N-methyltransferase.	EC:2.1.1.43	-	0.0	80%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Lysine degradation	00310		0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	histone lysine methylation	GO:0034968	Biological Process	80%
Blast2go	DNA binding	GO:0003677	Molecular Function	80%
Blast2go	histone-lysine N-methyltransferase activity	GO:0018024	Molecular Function	80%

Source	InterPros	Term	Type	Identity
Sma3	PEP-utilising enzyme, C-terminal	IPR000121	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	von Willebrand factor, type C	IPR001007	-	-
Sma3	SET domain	IPR001214	-	-
Sma3	Adenosine/AMP deaminase active site	IPR006650	-	-
Sma3	Pyruvate/Phosphoenolpyruvate kinase	IPR015813	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P93831

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 203 aas, your sequence is shorter than subject: 131 - 902

Fln protein: *DSGIYPSQ*ILDAVGSWRWAKFTV*WKWEG*P**FYGNRSSNTNKILA*KGKSTKAEVHLEVCWSSLIKKRIADSKDQPCRQFTPCDCQSMCGKQCPCLRSGTCCEKYCGCSKGCKNRFRGCHCAKSQYI

Protein Length: 132

Fln nts: TGAGATAGCGGAATATATCCATCGCAATGAATCCTCGATGCAGTGGGCAGCTGGAGATGGGCCAAATTCACGGTCTGATGGAAATGGGAAGGCTGACCGTAGTGATTCTATGGGAACAGAAGCTCGAACACGAACAAGATTTTGGCGTAGAAGGGGAAGAGTACGAAGGCTGAAGTACACTTGGAAGTCTGCTGGTCATCCCTCATAAAAAAGCGAATTGCTGATAGCAAAGATCAGCCATGTAGGCAGTTTACACCATGTGATTGTCAATCCATGTGTGGAAAGCAATGTCCCTGCCTACGTAGTGGGACTTGTTGTGAAAAATACTGTGGGTGTTCGAAAGGCTGCAAGAATCGTTTCCGAGGATGTCACTGTGCAAAGAGTCAATACATT

Fln Alignment:

biogeco3_mira_c27529___NRSSNTNKILA*KGKSTKAEVHLEVCWSSL----IKKRIADSKDQPCRQFTPCDCQSMCGKQCPCLRSGTCCEKYCGCSKGCKNRFRGCHCAKSQ
P93831__________________NQVRRRSRFLRRRGKVRR----LKYTWKSAAYHSIRKRITEKKDQPCRQFNPCNCKIACGKECPCLLNGTCCEKYCGCPKSCKNRFRGCHCAKSQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain