SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25486

Length: 343 nt

UniGene Fasta

>biog3_v1.0_unigene25486
AATGTATGCGCATGAAGCACCACGATTCTTATCATTCCTTTCTTGTAATTTCCTTTGTTGAGGAGACCCGTGTTTTGTCGGTGGGTTTGAGCTTTGTTGATATAACAGATGCAGTTGGTTTTGATCCTAATGCTTCCACATTGGCATGTGGTTTGGTGGAGGAAGGAAGGGTGGTACAGGTGTGTAGAAATGAAGTGCGCCTATGTGCCCCAACAGCAGCTGCTCATCCAGCAGGTCTGGCTGTCTCAGTTCCTTTCTGCACGTCTTGGAGGCCGAAAGGCTTAAGTATCAGTCTAGGAGCAATTGCTTGGAGAACAATAATTTTGGCAATGTCTTCTACATT

Ace file of the UniGene biog3_v1.0_unigene25486

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene12033	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Cleavage and polyadenylation specificity factor (CPSF) A subunit protein [Arabidopsis thaliana] gb\|AAP04148.1\| unknown protein [Arabidopsis thaliana] dbj\|BAF01468.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE75129.1\| Cleavage and polyadenylation s	-	-	59%
FL-Next	sp=DNA damage-binding protein 1; Solanum lycopersicum (Tomato) (Lycopersicon esculentum).	-	-	40%
Blast2go	dna damage-binding partial	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	77%
Blast2go	nucleus	GO:0005634	Cellular Component	77%
Blast2go	plastid	GO:0009536	Cellular Component	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Cleavage/polyadenylation specificity factor, A subunit, C-terminal	IPR004871	-	0.0	-
Sma3	Zinc finger, C2H2	IPR007087	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q6QNU4

Fln msg: Distance to subject end: 572 aas, your sequence is shorter than subject: 113 - 1090

Fln protein: CMRMKHHDSYHSFLVISFVEETRVLSVGLSFVDITDAVGFDPNASTLACGLVEEGRVVQVCRNEVRLCAPTAAAHPAGLAVSVPFCTSWRPKGLSISLGAIAWRTIILAMSST

Protein Length: 114

Fln nts: AATGTATGCGCATGAAGCACCACGATTCTTATCATTCCTTTCTTGTAATTTCCTTTGTTGAGGAGACCCGTGTTTTGTCGGTGGGTTTGAGCTTTGTTGATATAACAGATGCAGTTGGTTTTGATCCTAATGCTTCCACATTGGCATGTGGTTTGGTGGAGGAAGGAAGGGTGGTACAGGTGTGTAGAAATGAAGTGCGCCTATGTGCCCCAACAGCAGCTGCTCATCCAGCAGGTCTGGCTGTCTCAGTTCCTTTCTGCACGTCTTGGAGGCCGAAAGGCTTAAGTATCAGTCTAGGAGCAATTGCTTGGAGAACAATAATTTTGGCAATGTCTTCTACATT

Fln Alignment:

biogeco3_mira_c27508___MRMKHHDSYHSFLVISFVEETRVLSVGL-SFVDITDAVGFDPNASTLACGLVEEGRVVQVCRNEVRL
Q6QNU4__________________LRSATDDPYDTFLVVSFISETRVLAMNLEDELEETEIEGFNSQVQTLFCHDAVYNQLVQVTSNSVRL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain