SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25447

Length: 535 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene25447
GATGATTTCGTCACACACATGTCAGAACTTCTTGGCATTGAACGAGACGCTGAATTAGAAGCCACTCAAGAGGAGTTGGATAGCTGCTCCTATGCCAGATACAAGTTCAATTTCTCCAAGATCAATAGACTATTTGGTTAATCATGGACAACCTCAGCAAGAGCAATGTGATACTATTTGCAATCTGCGTGCAGTTAGCTCTTCAACAGGATTGGGTGGGATGCATTTGGTATCTTTTAGCGTGGAAGGAGGCCACCGATTACCACCAACTACAATCTCTCCCGGTGATATGGTTTGTGTTCGGATATCTGATAGCCGGGGTGCAGGTGCCACATCATGTACGCAAGGTTTTGTGCACTCTCTTTGCGAAGATGAGGGTAGAATTACTGTAGCATTGGAGTCTCGTTATGGGGATCCTACATTTTCTAAGCTCTCTGGCCAGTCTTTGAGAATTGATCGAATTCATGGCTTGGCAGATGCAATTACTTATGAGCGTAACTGTGAGGCTCTAATGCTTCTTCAGAAAGAAGACATT

Ace file of the UniGene biog3_v1.0_unigene25447 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene37722	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	putative DNA-binding protein [Arabidopsis thaliana] gb\|AED94034.1\| putative DNA-binding protein [Arabidopsis thaliana]	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	dna-binding protein smubp-2-like	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	0.0	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	AAA+ ATPase domain	IPR003593	-	0.0	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLV2

Fln msg: Distance to subject end: 519 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 148 - 691

Fln protein: MPDTSSISPRSIDYLVNHGQPQQEQCDTICNLRAVSSSTGLGGMHLVSFSVEGGHRLPPTTISPGDMVCVRISDSRGAGATSCTQGFVHSLCEDEGRITVALESRYGDPTFSKLSGQSLRIDRIHGLADAITYERNCEALMLLQKEDI

Protein Length: 149

Fln nts: GATGATTTCGTCACACACATGTCAGAACTTCTTGGCATTGAACGAGACGCTGAATTAGAAGCCACTCAAGAGGAGTTGGATAGCTGCTCCT_-_ATGCCAGATACAAGTTCAATTTCTCCAAGATCAATAGACTATTTGGTTAATCATGGACAACCTCAGCAAGAGCAATGTGATACTATTTGCAATCTGCGTGCAGTTAGCTCTTCAACAGGATTGGGTGGGATGCATTTGGTATCTTTTAGCGTGGAAGGAGGCCACCGATTACCACCAACTACAATCTCTCCCGGTGATATGGTTTGTGTTCGGATATCTGATAGCCGGGGTGCAGGTGCCACATCATGTACGCAAGGTTTTGTGCACTCTCTTTGCGAAGATGAGGGTAGAATTACTGTAGCATTGGAGTCTCGTTATGGGGATCCTACATTTTCTAAGCTCTCTGGCCAGTCTTTGAGAATTGATCGAATTCATGGCTTGGCAGATGCAATTACTTATGAGCGTAACTGTGAGGCTCTAATGCTTCTTCAGAAAGAAGACATT

Fln Alignment:

biogeco3_mira_c27459___AAPMPDTSSISPRSIDYLVNHGQPQQEQCDTICNLRAVSSSTGLGGMHLVSFSVEGGHRLPPTTISPGDMVCVRISDSRGAGATSCTQGFVHSLCEDEGRITVALESRYGDPTFSKLSGQSLRIDRIHGLADAITYERNCEALMLLQKEDI
B8LLV2__________________AAPMPDTSSVSPRSIEYLVNHGQPQQEQCDTICNLHAVSSSTGLGGMHLVSFSVEGGHRLPPTTISPGDMVCVRICDSRGAGATSCTQGFVHSLCEDEGRITVALESRYGDPTFSKLSCKSLRIDRIHGLADAITYERNCEALMVLQKEGL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain