SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25399

Length: 244 nt

UniGene Fasta

>biog3_v1.0_unigene25399
CCATTATTGCACTGGTTACAAAATGCCATTACCCACTGTACTTGCGTTGGGTATTCTTGGAAATGGGACTTCCTTGGCGCTCTTTTTATCGCCATTGCCAACATTCTGGAGCATTTACAAGCTAAGATCCACTCAGGAGTACTCCGAACTTCCTTATGTCTGCACTCTGTTCAATTGTGCTTTGTGGTTACTCTATGGAACTCCTTTCGTTAAACCCAACAGCATTCTCATCCTCACAATTAAT

Ace file of the UniGene biog3_v1.0_unigene25399

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene12775	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MtN3_slv domain containing protein	-	-	6.0e-26	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	bidirectional sugar transporter sweet4-like	-	-	0.0	68%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate transport	GO:0008643	Biological Process	68%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	68%
Blast2go	integral to membrane	GO:0016021	Cellular Component	68%
Blast2go	plasma membrane	GO:0005886	Cellular Component	68%

Source	InterPros	Term	Type	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	RAG1-activating protein-1-related	IPR004316	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3		IPR018169	-	-
Sma3		IPR018179	-	-
Sma3	Beta-ketoacyl synthase, active site	IPR018201	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AB08

Fln msg: Distance to subject end: 219 aas, your sequence is shorter than subject: 74 - 293

Fln protein: MPLPTVLALGILGNGTSLALFLSPLPTFWSIYKLRSTQEYSELPYVCTLFNCALWLLYGTPFVKPNSILILTIN

Protein Length: 75

Fln nts: CCATTATTGCACTGGTTACAAA_-_ATGCCATTACCCACTGTACTTGCGTTGGGTATTCTTGGAAATGGGACTTCCTTGGCGCTCTTTTTATCGCCATTGCCAACATTCTGGAGCATTTACAAGCTAAGATCCACTCAGGAGTACTCCGAACTTCCTTATGTCTGCACTCTGTTCAATTGTGCTTTGTGGTTACTCTATGGAACTCCTTTCGTTAAACCCAACAGCATTCTCATCCTCACAATTAAT

Fln Alignment:

biogeco3_mira_c27393___MPLPTVLALGILGNGTSLALFLSPLPTFWSIYKLRSTQEYSELPYVCTLFNCALWLLYGTPFVKPNSILILTIN
D5AB08__________________MHYPLQLALGIVGNGTSLALFLSPLPTFWSIYKLRSTQEFSELPYVCTLFTCALWLLYGTPFVKPNSILILTIN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain