SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25392

Length: 357 nt

UniGene Fasta

>biog3_v1.0_unigene25392
GAAGTCGTTGCGGCTACCCAGCAAGCATTGTATAACCAGCCTTGTACACTAGCACAAATCCAGGCCAAGGAAGCTGACATCCGGGCACTAGCTGAATTGACTCGTGCACTTGATAAAAAGGAAGCAATATTTGTAGAATTGAGAAATATGAATGACGATGTTGATGATCACAAGAAAAATGGAGAGGCCATGAGAAATTCAGAGAATTTCCGGAAACAGTATGCAACTGTCGTTCATCAGCTCAGGGATACAAATGATCAGGTTACTTCAGCTCTTGTATACTTGAGGCAACGGAATACATACCAAGAAAACTCGATGCCTCCATGGCATCGTGCGATTCCACTTCCTTTGGCTGTT

Ace file of the UniGene biog3_v1.0_unigene25392

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27440	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	protein ALWAYS EARLY 3 [Arabidopsis thaliana] sp\|Q6A332.1\|ALY3_ARATH RecName: Full=Protein ALWAYS EARLY 3; Short=AtALY3 emb\|CAE47462.1\| always early protein 3 [Arabidopsis thaliana] gb\|AEE76508.1\| protein ALWAYS EARLY 3 [Arabidopsis thaliana]	-	-	60%
FL-Next	sp=Protein ALWAYS EARLY 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	55%
Blast2go	dirp family expressed	-	-	70%

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	DIRP	IPR010561	-	-
Sma3		IPR014778	-	-
Sma3	SANT domain	IPR017884	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q6A332

Fln msg: Distance to subject end: 183 aas, your sequence is shorter than subject: 119 - 1132

Fln protein: EVVAATQQALYNQPCTLAQIQAKEADIRALAELTRALDKKEAIFVELRNMNDDVDDHKKNGEAMRNSENFRKQYATVVHQLRDTNDQVTSALVYLRQRNTYQENSMPPWHRAIPLPLAV

Protein Length: 120

Fln nts: GAAGTCGTTGCGGCTACCCAGCAAGCATTGTATAACCAGCCTTGTACACTAGCACAAATCCAGGCCAAGGAAGCTGACATCCGGGCACTAGCTGAATTGACTCGTGCACTTGATAAAAAGGAAGCAATATTTGTAGAATTGAGAAATATGAATGACGATGTTGATGATCACAAGAAAAATGGAGAGGCCATGAGAAATTCAGAGAATTTCCGGAAACAGTATGCAACTGTCGTTCATCAGCTCAGGGATACAAATGATCAGGTTACTTCAGCTCTTGTATACTTGAGGCAACGGAATACATACCAAGAAAACTCGATGCCTCCATGGCATCGTGCGATTCCACTTCCTTTGGCTGTT

Fln Alignment:

biogeco3_mira_c27383___AATQQALYNQPCTLAQIQAKEADIRALAELTRALDKKEAIFVELRNMNDDVDDHKKNG--EAMRNSENFRKQYATVVHQLRDTNDQVTSALVYLRQRNTYQEN
Q6A332__________________ALALQLFNSQPSSIGQIQAREADVQALSELTRALDKKELVLRELKCMNDEVVESQKDGHNNALKDSESFKKQYAAVLFQLSEINEQVSLALLGLRQRNTYQEN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain