SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25386

Length: 338 nt

UniGene Fasta

>biog3_v1.0_unigene25386
AATGTCATGGGACGAGCAGAAACAATGAACAGCGCAGGCATGTCACGCAATTTTAGCCGGGACTCGGTCTCCGTTCACTCCGTCTCAGTGGCAGGAGCTGGAACAACAGGCGTTGTCTTCAAATACATGATGGCTGGGGTACCAGTGCCACGGACCTCCTGATTCCCCTCGGAGGAACATCAATATTTTCTCCAGTTTACCGGTCACTGGATCGACCCTTCGTTCCAACTTGGGCTGGAGCTCTTTCCATCTTGGTTACGCGGCCAACAATGCCGATCCAGAGCCCGGCAGATGCCGCCGAACCGATGGTAAGAAATGGCGTTGTTCCAGGGACGCCG

Ace file of the UniGene biog3_v1.0_unigene25386

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7828	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	growth-regulating factor 1 [Arabidopsis thaliana] gb\|AAC32431.1\| unknown protein [Arabidopsis thaliana] gb\|AAM52876.1\| transcription activator [Arabidopsis thaliana] dbj\|BAH30398.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEC07363.1\| growth-regulat	-	-	2.8026e-45	61%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	56%
Blast2go	transcription activator	-	-	0.0	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on acid anhydrides, In phosphorous-containing anhydrides.	EC:3.6.1.-	-	0.0	71%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	71%
Blast2go	Lipopolysaccharide biosynthesis	00540	71%
Blast2go	Folate biosynthesis	00790	71%
Blast2go	Metabolic pathways	01100	71%

Source	GOs	Term	Type	Identity
Blast2go	leaf development	GO:0048366	Biological Process	71%
Blast2go	brassinosteroid mediated signaling pathway	GO:0009742	Biological Process	71%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	71%
Blast2go	protein phosphorylated amino acid binding	GO:0045309	Molecular Function	71%
Blast2go	ATP binding	GO:0005524	Molecular Function	71%
Blast2go	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	GO:0016818	Molecular Function	71%
Blast2go	cytosol	GO:0005829	Cellular Component	71%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	71%
Blast2go	chloroplast	GO:0009507	Cellular Component	71%
Blast2go	nucleus	GO:0005634	Cellular Component	71%
Blast2go	plasma membrane	GO:0005886	Cellular Component	71%
Blast2go	apoplast	GO:0048046	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3	Ornithine/DAP/Arg decarboxylase	IPR000183	-	-
Sma3	Extradiol ring-cleavage dioxygenase, class I /II	IPR000486	-	-
Sma3	DENN	IPR001194	-	-
Sma3	uDENN	IPR005113	-	-
Sma3	Resolvase, holliday junction-type, YqgF-like	IPR005227	-	-
Sma3	Universal stress protein A	IPR006015	-	-
Sma3	UspA	IPR006016	-	-
Sma3	YqgF/RNase H-like domain	IPR006641	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	WRC	IPR014977	-	-
Sma3	Glutamine-Leucine-Glutamine, QLQ	IPR014978	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9IBM4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 354 aas, your sequence is shorter than subject: 112 - 607

Fln protein: MSWDEQKQ*TAQACHAILAGTRSPFTPSQWQELEQQALSSNT*WLGYQCHGPPDSPRRNINIFSSLPVTGSTLRSNLGWSSFHLGYAANNADPEPGRCRRTDGKKWRCSRDA

Protein Length: 113

Fln nts: AATGTCATGGGACGAGCAGAAACAATGAACAGCGCAGGCATGTCACGCAATTTTAGCCGGGACTCGGTCTCCGTTCACTCCGTCTCAGTGGCAGGAGCTGGAACAACAGGCGTTGTCTTCAAATACATGATGGCTGGGGTACCAGTGCCACGGACCTCCTGATTCCCCTCGGAGGAACATCAATATTTTCTCCAGTTTACCGGTCACTGGATCGACCCTTCGTTCCAACTTGGGCTGGAGCTCTTTCCATCTTGGTTACGCGGCCAACAATGCCGATCCAGAGCCCGGCAGATGCCGCCGAACCGATGGTAAGAAATGGCGTTGTTCCAGGGACGCCG

Fln Alignment:

biogeco3_mira_c27376___HAILAGTRSPFTPSQWQELEQQALSSNT*WLGYQCHGPPDSPRRNINIFSSLP--VTGSTLRSNLGWSSFHLGYAANNADPEPGRCRRTDGKKWRCSRDA
B9IBM4__________________HGPLTGVRGPFTPSQWMELEHQALIYKYITARVPVPSNLIIPLKKSVYPYSLPGSSTGSFPHNSLGWSAFHLGYPGNNTDPEPGRCRRTDGKKWRCSRDA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain