SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25315

Length: 433 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene25315
GAGCTTGAGTTCCAGGTTAGTCTGTTATCATCATTTTGTCAGAAGCTGGCATTTTCTTCTGTTGTGCTTATTGATCATGATGATGGTGGATTGCTGGCCTTAATGGCAGCTGAAAGGTTGTACAAACGACAAGATATTTCCAATGTAGAGGTCAAGGGCATTGTGCTGGTCGGTGCAGAAGACACATTAGCTCAACTAAAATCAGCTCAAGCCTCGGTATCCAGAATTCAAAATATTAGAGTGGTCACAACTTCCAAATGTGGGCACCTCCCTCATGAAGAGTGTCCAACAGTACTATTGACACACTGGTACCTTTTGTCTCTGAAGTGAAAATGGAGCTATCCTTAAAGCAAGGTTTGGCAGGCACTTATTCTTAAACTGCTGGTGTGGACCTCCTGAGCCATTGTGAGAACATGGAACTTGAAATTACATT

Ace file of the UniGene biog3_v1.0_unigene25315 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene55300	1/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	alpha/beta hydrolase [Lilium longiflorum]	-	-	2.0e-30	60%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	58%
Blast2go	protein	-	-	5.24923e-37	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	0.0	-
Sma3	Epoxide hydrolase-like	IPR000639	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8QSM0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 69 aas, your sequence is shorter than subject: 110 - 482

Fln protein: ELEFQVSLLSSFCQKLAFSSVVLIDHDDGGLLALMAAERLYKRQDISNVEVKGIVLVGAEDTLAQLKSAQASVSRIQNIRVVTTSKCGHLPHEECPTVLLTHWYLLSLK*

Protein Length: 111

Fln nts: GAGCTTGAGTTCCAGGTTAGTCTGTTATCATCATTTTGTCAGAAGCTGGCATTTTCTTCTGTTGTGCTTATTGATCATGATGATGGTGGATTGCTGGCCTTAATGGCAGCTGAAAGGTTGTACAAACGACAAGATATTTCCAATGTAGAGGTCAAGGGCATTGTGCTGGTCGGTGCAGAAGACACATTAGCTCAACTAAAATCAGCTCAAGCCTCGGTATCCAGAATTCAAAATATTAGAGTGGTCACAACTTCCAAATGTGGGCACCTCCCTCATGAAGAGTGTCCAACAGTACTATTGACACACTGGTACCTTTTGTCTCTGAAGTGAAAATGGAGCTATCCTTAAAGCAAGGTTTGGCAGGCACTTATTCTTAAACTGCTGGTGTGGACCTCCTGAGCCATTGTGAGAACATGGAACTTGAAATTACATT

Fln Alignment:

biogeco3_mira_c27281___ELEFQVSLLSSFCQKLAFSSVVLIDHDDGGLLALMAAERLYKRQDISNVEVKGIVLVGAEDT
D8QSM0__________________ELQSQVDLLLSFCQKLKFSSVVLVGHDDGGLLALMAAAKILKSPSSTQVVIKGVVLIAVSSS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain