SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25293

Length: 365 nt

UniGene Fasta

>biog3_v1.0_unigene25293
GAAGGCAACCGAAAGCAATGCTGTGCACAGCTATGGTTGCAGCGTCAGTGGGACATCTTCAAATGACTGTGTCCGAACCCTTGCCTTTCCATCTATTTCAACATCTGATTTTCATTTGTCATGAAAAAGCAGCTAATATAATTATAGAGAAAGTTTCAGAGTTTTTGGAGATGCACAAAACTTCAGATTTCAGACTTATTATGGTAGACTTGGTTCATGACTCTGATATGCTTTCAAGGGTTCGTGTCAAGGCAGCTGAAAAGAGATTGGATTCTAGAAGGTTTCTTACATTTGTGGGTGACATCACTAAGCTATATTCAAAAGGGGGCCTAAAGTGTAACATAATTGTGAATGCTGCTAACTGG

Ace file of the UniGene biog3_v1.0_unigene25293

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene32901	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	aprataxin [Arabidopsis thaliana] sp\|Q9M041.1\|BH140_ARATH RecName: Full=Transcription factor bHLH140; AltName: Full=Basic helix-loop-helix protein 140; Short=AtbHLH140; Short=bHLH 140; AltName: Full=Transcription factor EN 122; AltName: Full=bHLH transcrip	-	-	2.0e-16	46%
FL-Next	sp=Transcription factor bHLH140; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	77%
Blast2go	transcription factor bhlh140-like	-	-	9.33982e-22	62%

Source	ECs	Term	Type	e value	Identity
Blast2go	Adenylylsulfatase.	EC:3.6.2.1	-	9.33982e-22	62%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Sulfur metabolism	00920		9.33982e-22	62%
Blast2go	Metabolic pathways	01100		9.33982e-22	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	sulfur compound metabolic process	GO:0006790	Biological Process	9.33982e-22	62%
Blast2go	purine ribonucleotide metabolic process	GO:0009150	Biological Process	9.33982e-22	62%
Blast2go	adenylylsulfatase activity	GO:0047627	Molecular Function	9.33982e-22	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9M041

Fln msg: Separated hits, possible frame ERROR between 112 and 123, Distance to subject end: 361 aas, your sequence is shorter than subject: 122 - 912

Fln protein: KATESNAVHSYGCSVSGTSSNDCVRTLAFPSISTSDxxxxxEKAANIIIEKVSEFLEMHKTSDFRLIMVDLVHDSDMLSRVRVKAAEKRLDSRRFLTFVGDITKLYSKGGLKCNIIVNAANW

Protein Length: 123

Fln nts: GAAGGCAACCGAAAGCAATGCTGTGCACAGCTATGGTTGCAGCGTCAGTGGGACATCTTCAAATGACTGTGTCCGAACCCTTGCCTTTCCATCTATTTCAACATCTGATTTxxxxxxxxxxxxTGAAAAAGCAGCTAATATAATTATAGAGAAAGTTTCAGAGTTTTTGGAGATGCACAAAACTTCAGATTTCAGACTTATTATGGTAGACTTGGTTCATGACTCTGATATGCTTTCAAGGGTTCGTGTCAAGGCAGCTGAAAAGAGATTGGATTCTAGAAGGTTTCTTACATTTGTGGGTGACATCACTAAGCTATATTCAAAAGGGGGCCTAAAGTGTAACATAATTGTGAATGCTGCTAACTGG

Fln Alignment:

biogeco3_mira_c27250___SNDCVRTLAFPSISTSDFxxxxEKAANIIIEKVSEFLEMHKTSDFRLIMVDLVHDSDMLSRVRVKAAEKRLDSRRFLTFVGDITKLYSKGGLKCNIIVNAANW
Q9M041__________________SADIVPTLAFPSISTADFxxxxEKASDIIVEKAEEFLS--KLGTARLVLVDLSRGSKILSLVKAKASQKNIDSAKFFTFVGDITKLRSEGGLHCNVIANATNW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain