SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25248

Length: 241 nt

UniGene Fasta

>biog3_v1.0_unigene25248
AATGTAATGTTCAGGCGGAAGTTATTGAGAGGCTCTTGCCCATTCTGGATAGTTTCGAACTAGCGAAAACACAGATCAAGATAGAAACAGAAGGAGAGGAAAACTAAACAATAGCTACCAGAGTATATATAAACAGATTAGTGAAGTCATGAGAGCATTGGGTGTCTCTGTTGTAGAGACAATTGGCAAGCTATTTGATCCCATGCTCCATGAAGCAGTTATGCGTGAGGAATCGACAGAA

Ace file of the UniGene biog3_v1.0_unigene25248

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3051	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	GrpE protein homolog n=1 Tax=Picea sitchensis RepID=A9NPB5_PICSI	-	-	50%
FL-Next	sp=GrpE protein homolog; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	71%
Blast2go	protein	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	protein folding	GO:0006457	Biological Process	76%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	76%
Blast2go	chaperone binding	GO:0051087	Molecular Function	76%
Blast2go	copper ion binding	GO:0005507	Molecular Function	76%
Blast2go	adenyl-nucleotide exchange factor activity	GO:0000774	Molecular Function	76%
Blast2go	isomerase activity	GO:0016853	Molecular Function	76%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	76%
Blast2go	mitochondrial matrix	GO:0005759	Cellular Component	76%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	76%
Blast2go	thylakoid	GO:0009579	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	GrpE nucleotide exchange factor	IPR000740	-	-
Sma3	GrpE nucleotide exchange factor, head	IPR009012	-	-
Sma3	GrpE nucleotide exchange factor, coiled-coil	IPR013805	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NPB5

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 101 and 101, Distance to subject end: 76 aas, your sequence is shorter than subject: 80 - 338

Fln protein: CNVQAEVIERLLPILDSFELAKTQIKIETEGExxLNNSYQSIYKQISEVMRALGVSVVETIGKLFDPMLHEAVMREESTE

Protein Length: 81

Fln nts: AATGTAATGTTCAGGCGGAAGTTATTGAGAGGCTCTTGCCCATTCTGGATAGTTTCGAACTAGCGAAAACACAGATCAAGATAGAAACAGAAGGAGAGxxxxxxCTAAACAATAGCTACCAGAGTATATATAAACAGATTAGTGAAGTCATGAGAGCATTGGGTGTCTCTGTTGTAGAGACAATTGGCAAGCTATTTGATCCCATGCTCCATGAAGCAGTTATGCGTGAGGAATCGACAGAA

Fln Alignment:

biogeco3_mira_c27186___NVQAEVIERLLPILDSFELAKTQIKIETEGEEKLNNSYQSIYKQISEVMRALGVSVVETIGKLFDPMLHEAVMREEST
A9NPB5__________________NIQGDVIESLLPMVDDFERAKTQIKIQTEGEEKIDKSYQGIYKQFVEIMKGLHVNVVDTVGKPFDPMLHEAILHEDST

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain