SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25185

Length: 457 nt

UniGene Fasta

>biog3_v1.0_unigene25185
AATGTCAAGCACCATCTATATCTCCTAACCAGGACAGTACAGAAGAAGAAATTGAAATATTTACAGATACTGGAGATATAGAGAATTTGAATGGGGCTAAAATGAGGGATTTAAATAACGTGTTTCCTTTGGATTATGGTCCACAGTTGGATCTTGAAAATAGAATTGTCAATTTGCGATGGCTCAAAGAAGCATGTGATCAGATTGTTGCTGCCAGAGGTGGATCACAGGTTTCTGGAGATGAACTGGCTATGTTGTTATGTCAGGTGCTGGATTCTGATAAGACAGGGGATGAGATAGCTGGGGAGATACTTGATATGATTGGAGATGACGGATTTGAGATAACACAGAAAATATTACAGCATCGGAAAGAACTTGTCGATATGGTACACAAAGGGTTGTTGGTATTAAAATCTGAGAAAACATCTTCCTCATCTATGCCTAGTTATGGGACATT

Ace file of the UniGene biog3_v1.0_unigene25185

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6012	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	59%
Blast2go	activating signal cointegrator 1 complex subunit	-	-	9.49091e-28	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	9.49091e-28	71%
Blast2go	ATP-dependent helicase activity	GO:0008026	Molecular Function	9.49091e-28	71%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	9.49091e-28	71%
Blast2go	mitochondrion	GO:0005739	Cellular Component	9.49091e-28	71%

Source	InterPros	Term	Type	Identity
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Sec63 domain	IPR004179	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3		IPR018127	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6GSZ5

Fln msg: Distance to subject end: 394 aas, your sequence is shorter than subject: 151 - 711

Fln protein: CQAPSISPNQDSTEEEIEIFTDTGDIENLNGAKMRDLNNVFPLDYGPQLDLENRIVNLRWLKEACDQIVAARGGSQVSGDELAMLLCQVLDSDKTGDEIAGEILDMIGDDGFEITQKILQHRKELVDMVHKGLLVLKSEKTSSSSMPSYGT

Protein Length: 152

Fln nts: AATGTCAAGCACCATCTATATCTCCTAACCAGGACAGTACAGAAGAAGAAATTGAAATATTTACAGATACTGGAGATATAGAGAATTTGAATGGGGCTAAAATGAGGGATTTAAATAACGTGTTTCCTTTGGATTATGGTCCACAGTTGGATCTTGAAAATAGAATTGTCAATTTGCGATGGCTCAAAGAAGCATGTGATCAGATTGTTGCTGCCAGAGGTGGATCACAGGTTTCTGGAGATGAACTGGCTATGTTGTTATGTCAGGTGCTGGATTCTGATAAGACAGGGGATGAGATAGCTGGGGAGATACTTGATATGATTGGAGATGACGGATTTGAGATAACACAGAAAATATTACAGCATCGGAAAGAACTTGTCGATATGGTACACAAAGGGTTGTTGGTATTAAAATCTGAGAAAACATCTTCCTCATCTATGCCTAGTTATGGGACATT

Fln Alignment:

biogeco3_mira_c27103___LENRIVNLRWLKEACDQIVAARGG-SQVSGDELAMLLCQVLDSDKTGDEIAGEILDMIGDDGFEITQKILQHRKELVDMVHKGLLVLK
F6GSZ5__________________VDRRNFTLRWLRDACDGIV--RGSTSQLSQDELAMAICRVLDSDKPGEEIAGDLLDLVGDNAFEMVQDIISHRKDLTDAIHHGLLVLK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain