SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25172

Length: 391 nt

UniGene Fasta

>biog3_v1.0_unigene25172
AATGTGTGCTGTAAACTGAAGTCTCTCAAGATTCCATGGAATAAGCCTGTTGGAGATGTTACTTTAAGGTGCATCGGCACACTGTGCCCTCGTCTAGTTTCTCTCGATGTGAGCAACTGTTTGCTAGTGACAGAAAACGGGCTGAAAGCTATTAGTAAAGGTTGTCCTGATCTGAGAAAACTATGCTTGAAAGGATGCAGAAAGGTTATGAGTCTCGGAATTGATGAGGGATTTAGGAATTTGGAGCATTTACAAGTAGAGGGATCGGGTTTTACAGATTCAGGATTGATCGCCGTTGGTAAATGTTGCAGGCACCTTTTAGGTATCGATTTGGAAGGGTGCTCGAGAATAACAGAGTCCGGGCTTAAGAAGATCATGGAAGATTGACATT

Ace file of the UniGene biog3_v1.0_unigene25172

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4739	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Leucine rich repeat-like protein (Fragment) n=3 Tax=Picea sitchensis RepID=E0ZA86_PICSI	-	-	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	33%
Blast2go	leucine rich repeat-like protein	-	-	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAR0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 64 aas, your sequence is shorter than subject: 129 - 262

Fln protein: NVCCKLKSLKIPWNKPVGDVTLRCIGTLCPRLVSLDVSNCLLVTENGLKAISKGCPDLRKLCLKGCRKVMSLGIDEGFRNLEHLQVEGSGFTDSGLIAVGKCCRHLLGIDLEGCSRITESGLKKIMED*

Protein Length: 130

Fln nts: AATGTGTGCTGTAAACTGAAGTCTCTCAAGATTCCATGGAATAAGCCTGTTGGAGATGTTACTTTAAGGTGCATCGGCACACTGTGCCCTCGTCTAGTTTCTCTCGATGTGAGCAACTGTTTGCTAGTGACAGAAAACGGGCTGAAAGCTATTAGTAAAGGTTGTCCTGATCTGAGAAAACTATGCTTGAAAGGATGCAGAAAGGTTATGAGTCTCGGAATTGATGAGGGATTTAGGAATTTGGAGCATTTACAAGTAGAGGGATCGGGTTTTACAGATTCAGGATTGATCGCCGTTGGTAAATGTTGCAGGCACCTTTTAGGTATCGATTTGGAAGGGTGCTCGAGAATAACAGAGTCCGGGCTTAAGAAGATCATGGAAGATTGACATT

Fln Alignment:

biogeco3_mira_c27084___CCKLKSLKIPWNKPVGDVTLRCIGTLCPRLVSLDVSNCLLVTENGLKAISKGCPDLRKLCLKGCRKVMSLGIDE---GFRNLEHLQVEGS-GFTDSGLIAVGKCCRHLLGIDLEGCSRITESGL
D5AAR0__________________CSYLQELDLYRSVGVGDVGLAAIANGCPRLKSINVSYCIHVTDNGLTSLAQ-LQKLHQLEIRGCSGISSAGLSAIALGCKRIVELDIKRCYGVDDVGILAVAKSCQNLRQMNVSYCP-ISDVGL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain