SustainPineDB

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Assembly info
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ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25096

Length: 230 nt

UniGene Fasta

>biog3_v1.0_unigene25096
AATGTAATTCATTTATACTGGGTTGACCGCAACAGAGTTTTCTTTCACACCATGGGTGGTCGTGAAGGCCTTGTGGATACTGCGGTGAAAACGGCTGATGTAGGATATATGTCTCGAAGATTGATGAAAGCCTTGGAAGACCTTTCAACTCACTATGATGGGACAGTACGCAATGCAAGTGGTGGGATTGTCCAGCTTTTATATGGGGATGATGGTATGGACCCAGCTCA

Ace file of the UniGene biog3_v1.0_unigene25096

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27088	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	DNA-directed RNA polymerase (Fragment) n=2 Tax=Spermatophyta RepID=Q2TUM9_9CONI	-	-	95%
FL-Next	sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress).	-	-	67%
Blast2go	rna polymerase iii large subunit	-	-	90%

Source	InterPros	Term	Type	Identity
Sma3	Formate/nitrite transporter	IPR000292	-	-
Sma3	RNA polymerase II, heptapeptide repeat, eukaryotic	IPR000684	-	-
Sma3	RNA polymerase, alpha subunit	IPR000722	-	-
Sma3	Hydroxymethylglutaryl-CoA reductase, class I/II	IPR002202	-	-
Sma3	RNA polymerase, N-terminal	IPR006592	-	-
Sma3	RNA polymerase Rpb1, domain 3	IPR007066	-	-
Sma3	RNA polymerase Rpb1, domain 7	IPR007073	-	-
Sma3	RNA polymerase Rpb1, domain 6	IPR007075	-	-
Sma3	RNA polymerase Rpb1, domain 1	IPR007080	-	-
Sma3	RNA polymerase Rpb1, domain 5	IPR007081	-	-
Sma3	RNA polymerase Rpb1, domain 4	IPR007083	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	DNA-directed RNA pol I, largest subunit	IPR015699	-	-
Sma3	DNA-directed RNA polymerase III largest subunit	IPR015700	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P18616

Fln msg: Distance to subject end: 943 aas, your sequence is shorter than subject: 76 - 1839

Fln protein: NVIHLYWVDRNRVFFHTMGGREGLVDTAVKTADVGYMSRRLMKALEDLSTHYDGTVRNASGGIVQLLYGDDGMDPA

Protein Length: 77

Fln nts: AATGTAATTCATTTATACTGGGTTGACCGCAACAGAGTTTTCTTTCACACCATGGGTGGTCGTGAAGGCCTTGTGGATACTGCGGTGAAAACGGCTGATGTAGGATATATGTCTCGAAGATTGATGAAAGCCTTGGAAGACCTTTCAACTCACTATGATGGGACAGTACGCAATGCAAGTGGTGGGATTGTCCAGCTTTTATATGGGGATGATGGTATGGACCCAGCTCA

Fln Alignment:

biogeco3_mira_c26985___FFHTMGGREGLVDTAVKTADVGYMSRRLMKALEDLSTHYDGTVRNASGGIVQLLYGDDGMD
P18616__________________FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain