SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25083

Length: 366 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene25083
ACTTCATCTATCTGTACATTCCCAGGCATTTCATCAGCACAATTTCCTTGCGCGATTTCCTTCCATTGCTTGATACTATTCACAAGAAGAATGGCCACCAATTCATCTTCAAAAACTAATCCTCCGAGGCAGAGAAAAAGAGTAGACGTTGATCCGGCTAATTTGAAGCGAGCCAGAGATGGCAGTGGTTTCATTAAATGTGATGTCTGCAACAAAGACGTTCCTGTGGCACTTTCCGATATGCACGATTGCAAACTTGAAAATAAGATATGGTCTAACTTTGATGTCTCCAAAGAGGCCAAGCATGCAGATGCCCAGAAAGCACCTGAAGCGAAAAACAAAGAAGAAGTCGGAGGAGAAGACATT

Ace file of the UniGene biog3_v1.0_unigene25083 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15765	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	High mobility group family n=1 Tax=Populus trichocarpa RepID=A9PB77_POPTR	-	-	2.0e-36	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Blast2go	high mobility group b protein 7-like	-	-	0.0	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA binding	GO:0003677	Molecular Function	0.0	70%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	70%

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR000910	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NTD7

Fln msg: Distance to subject end: 128 aas, your sequence is shorter than subject: 92 - 220

Fln protein: MATNSSSKTNPPRQRKRVDVDPANLKRARDGSGFIKCDVCNKDVPVALSDMHDCKLENKIWSNFDVSKEAKHADAQKAPEAKNKEEVGGEDI

Protein Length: 93

Fln nts: ACTTCATCTATCTGTACATTCCCAGGCATTTCATCAGCACAATTTCCTTGCGCGATTTCCTTCCATTGCTTGATACTATTCACAAGAAGA_-_ATGGCCACCAATTCATCTTCAAAAACTAATCCTCCGAGGCAGAGAAAAAGAGTAGACGTTGATCCGGCTAATTTGAAGCGAGCCAGAGATGGCAGTGGTTTCATTAAATGTGATGTCTGCAACAAAGACGTTCCTGTGGCACTTTCCGATATGCACGATTGCAAACTTGAAAATAAGATATGGTCTAACTTTGATGTCTCCAAAGAGGCCAAGCATGCAGATGCCCAGAAAGCACCTGAAGCGAAAAACAAAGAAGAAGTCGGAGGAGAAGACATT

Fln Alignment:

biogeco3_mira_c26965___MATNSSSKTNPPRQRKRVDVDPANLKRARDGSGFIKCDVCNKDVPVALSDMHDCKLENKIWSNFDVSKEAKHADAQKAPEAKNKEEVGGED
A9NTD7__________________MATNASSKTNPPRQRKRVDVDPANLKRARDGSGFTKCDVCNKHIPVALSDMHDCQLEDKIRSNFDASKETKHADAQKPPEAKKAKKKSADE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain