SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25081

Length: 229 nt

UniGene Fasta

>biog3_v1.0_unigene25081
AATGTAAACAACATTGCTGAGCCTCCTCCTGAATGGAAGGATTGGGAAGAGAGGAAGATGCAGGAAGAATTGGATTCCAATGGATGTATTGCTATTAGAAGGCGTCCTGCCACTGGACCTCCATTGCATTACGTGGGTCCTTTTGAATTCCGTCTGCAGAACAAAGGCAACACTCCCAGAAACATATTGGAGGAAATTGTTTGGAACAAAGAAAAGGAGGTTACACAGA

Ace file of the UniGene biog3_v1.0_unigene25081

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene478	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	indole-3-glycerol phosphate synthase [Arabidopsis thaliana] gb\|AED95636.1\| indole-3-glycerol phosphate synthase [Arabidopsis thaliana]	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	indole-3-glycerol phosphate synthase	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Indole-3-glycerol-phosphate synthase.	EC:4.1.1.48	-	0.0	85%

Source	KEGGs	Term	Identity
Blast2go	Phenylalanine, tyrosine and tryptophan biosynthesis	00400	85%
Blast2go	Biosynthesis of phenylpropanoids	01061	85%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	85%
Blast2go	Biosynthesis of plant hormones	01070	85%
Blast2go	Metabolic pathways	01100	85%
Blast2go	Biosynthesis of secondary metabolites	01110	85%

Source	GOs	Term	Type	Identity
Blast2go	tryptophan metabolic process	GO:0006568	Biological Process	85%
Blast2go	indole-3-glycerol-phosphate synthase activity	GO:0004425	Molecular Function	85%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	Indole-3-glycerol phosphate synthase	IPR013798	-	-
Sma3	Indole-3-glycerol phosphate synthase, conserved site	IPR001468	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUS4

Fln msg: Distance to subject end: 267 aas, your sequence is shorter than subject: 76 - 416

Fln protein: NVNNIAEPPPEWKDWEERKMQEELDSNGCIAIRRRPATGPPLHYVGPFEFRLQNKGNTPRNILEEIVWNKEKEVTQ

Protein Length: 77

Fln nts: AATGTAAACAACATTGCTGAGCCTCCTCCTGAATGGAAGGATTGGGAAGAGAGGAAGATGCAGGAAGAATTGGATTCCAATGGATGTATTGCTATTAGAAGGCGTCCTGCCACTGGACCTCCATTGCATTACGTGGGTCCTTTTGAATTCCGTCTGCAGAACAAAGGCAACACTCCCAGAAACATATTGGAGGAAATTGTTTGGAACAAAGAAAAGGAGGTTACACAGA

Fln Alignment:

biogeco3_mira_c26962___NNIAEPPPEWKDWEERKMQEELDSNGCIAIRRRPATGPPLHYVGPFEFRLQNKGNTPRNILEEIVWNKEKEVTQ
A9NUS4__________________NNIAEPPPEWKDWEERKRQEELDSNGGIAIRRRPATGPPLHYVGPFEFRLQNKGNTPRNILEEIVWNKEKEVTK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain