SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25061

Length: 1232 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene25061

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4434	16/33
SustainPine v2.0	sp_v2.0_unigene5437	15/33
SustainPine v2.0	sp_v2.0_unigene20315	2/33

Source	Descriptions	Term	Type	Identity
AutoFact	CC-NBS-LRR resistance-like protein n=5 Tax=Pinaceae RepID=Q1L6F3_PINLA	-	-	93%
FL-Next	tr=CC-NBS-LRR resistance-like protein; Pinus lambertiana (Sugar pine).	-	-	94%
Blast2go	cc-nbs-lrr protein	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	defense response	GO:0006952	Biological Process	78%
Blast2go	apoptotic process	GO:0006915	Biological Process	78%
Blast2go	ATP binding	GO:0005524	Molecular Function	78%

Source	InterPros	Term	Type	Identity
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q1L6F3

Fln msg: your sequence is shorter than subject: 289 - 777

Fln protein: NVIVSIHTGAMEEYQWCKMNFHEAEALILLFSASNYFLPSFLNKMRKLKVLIVFNYGSKRATVKGLPLLSSLSQLKTIRLERLIVPPLQEHSKVLQNLEKLSLSLCEGLGNMSRFNGIQSNLKLPIMLDFNMDHCCDLEELPLGICDMSSVQKWSITNCHLLRKLPDDLGRLSSLRMLRISACLGLKELPASIGKLGKLEYIDISLCECLKELPEEIGQLKKLEELDMRECSRLRKLPKSVGGLKSLKHVICDEKIGQQWNRLKSFSATMDLRVEIVEAHFSLDWLDG*

Protein Length: 290

Fln nts: AATGTAATAGTTTCCATTCACACAGGAGCAATGGAAGAGTATCAGTGGTGTAAGATGAATTTTCATGAGGCAGAGGCCTTGATTTTACTCTTTTCTGCAAGCAATTACTTTCTTCCATCGTTTTTGAATAAAATGAGAAAATTGAAAGTCCTCATAGTATTCAACTATGGGTCCAAGAGAGCCACAGTGAAGGGTCTGCCATTGCTATCATCACTTTCTCAGCTCAAGACTATTCGTTTGGAGAGGTTGATTGTCCCACCACTTCAAGAGCACAGTAAAGTCTTACAGAACTTAGAGAAGCTATCTTTAAGCTTATGTGAAGGGCTTGGAAATATGTCCAGGTTCAATGGCATTCAGTCGAATCTAAAGCTTCCCATAATGCTAGATTTTAACATGGATCATTGCTGTGATTTGGAGGAGTTGCCCCTTGGCATTTGTGACATGTCTTCAGTTCAAAAGTGGTCTATCACTAACTGTCACCTTCTTCGAAAGTTACCTGATGATTTGGGGAGGCTCAGTTCTTTAAGAATGTTAAGAATATCTGCATGTCTAGGTCTGAAAGAGCTTCCAGCATCTATTGGAAAACTTGGGAAGCTGGAATATATAGACATTTCTCTATGTGAGTGCTTGAAAGAACTTCCCGAGGAAATAGGGCAGCTAAAGAAACTTGAGGAGCTTGACATGAGAGAGTGTTCTCGGTTGAGGAAGCTGCCTAAATCAGTTGGAGGGCTTAAATCTCTAAAGCATGTTATATGTGATGAAAAGATTGGGCAGCAATGGAATCGTCTTAAAAGCTTTTCTGCTACTATGGATCTTAGAGTTGAAATTGTAGAAGCTCACTTCAGCTTAGATTGGCTGGATGGTTAA___GATCTCTCTCAAACAGGATGCCAAGTGCAAGTAGACTGGATCAGGATGAGTGCAGACATGTTATCCATGTTCTATGGGCATTATTACCTCTTCAGAAATTAGTTATCCGTAGTTTCAAAGCAGTGTGTCTAGTCCGGGTGGTATATCTAAATAAATAGTGGTAAAGAATACAAGTGTGTATCTGGGGTGTCTAGTTGTCATCGTAACATTAAGGACTTTTTAAATATTGTATTGCAAGAGTAAATGACTTTAAGCATTGTGTTTTAAGACTTTAAATATTGTGTTTTAAGATTATAAGTTCACTTCAGTTGTGGACAGAAGTGAACAAGGACAAATTTGTAATGGATTTGTTATGTCTGTACATT

Fln Alignment:

biogeco3_mira_c26936___IVSIHTGAMEEYQWCKMNFHEAEALILLFSASNYFLPSFLNKMRKLKVLIVFNYGSKRATVKGLPLLSSLSQLKTIRLERLIVPPLQEHSKVLQNLEKLSLSLCEGLGNMSRFNGIQSNLKLPIMLDFNMDHCCDLEELPLGICDMSSVQKWSITNCHLLRKLPDDLGRLSSLRMLRISACLGLKELPASIGKLGKLEYIDISLCECLKELPEEIGQLKKLEELDMRECSRLRKLPKSVGGLKSLKHVICDEKIGQQWNRLKSFSATMDLRVEIVEAHFSLDWLDG
Q1L6F3__________________IVSIHTGTMEEDQWCKMNFCEAEALVLLFSATNYFLPSFLSKMRKLKVLIVFNYGSKRATVKGLPLLSSLAQLKTIRLERLVVPPLQEHSKVLQKLEKVSLSLCEGLGNMSRFNGNQSNLKLPVMLDFNMDHCCDLEELPLGICDMSSAQKWSITNCHLLRKLPDDLGRLSSLRMLRISACLGLKELPASIGKLGKLEYMDISLCECLKELPEEIGQLKKLEELDMRECARLRKLPKSVGGLKSLKHVICDEKIGQQWNRLKSFSATMDLRVEIVEAHFSLDWLDG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain