SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25060

Length: 229 nt

UniGene Fasta

>biog3_v1.0_unigene25060
TAAATGGAACAAAATGTGGTGCACGAATGGACCAGTTGCAGAGACACTGATTATTTATGCAAAAACAGATCCAAATGCTGGATCAAAAGGAATCACAGTTTTCATCATTGAAAAGGGCATTGAAGGCTTCAGCACTGCTCAAAAGCTGGACAAGCTTGGGATGCGGGGTAGTGATACATGTGAACTGGTTTTTGAGAATTGCTTTGTCCCTGAAGAGAATGTACTAGGG

Ace file of the UniGene biog3_v1.0_unigene25060

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5031	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Isovaleryl-CoA dehydrogenase 1, mitochondrial; Short=IVD 1; Flags: Precursor emb\|CAC08233.1\| isovaleryl-CoA dehydrogenase [Solanum tuberosum]	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	isovaleryl- dehydrogenase	-	-	92%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:1.3.99.1-	-	0.0	92%

Source	GOs	Term	Type	Identity
Blast2go	leucine catabolic process	GO:0006552	Biological Process	92%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	92%
Blast2go	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	92%
Blast2go	isovaleryl-CoA dehydrogenase activity	GO:0008470	Molecular Function	92%
Blast2go	ATP binding	GO:0005524	Molecular Function	92%
Blast2go	mitochondrial matrix	GO:0005759	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	Acyl-CoA oxidase/dehydrogenase, central domain	IPR006091	-	-
Sma3	Acyl-CoA dehydrogenase, conserved site	IPR006089	-	-
Sma3	Acyl-CoA dehydrogenase, N-terminal	IPR006092	-	-
Sma3	Acyl-CoA oxidase/dehydrogenase, type 1	IPR006090	-	-
Sma3	Acyl-CoA dehydrogenase/oxidase, N-terminal	IPR013786	-	-
Sma3		IPR013764	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPF0

Fln msg: Distance to subject end: 155 aas, your sequence is shorter than subject: 72 - 227

Fln protein: MWCTNGPVAETLIIYAKTDPNAGSKGITVFIIEKGIEGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLG

Protein Length: 73

Fln nts: TAAATGGAACAAA_-_ATGTGGTGCACGAATGGACCAGTTGCAGAGACACTGATTATTTATGCAAAAACAGATCCAAATGCTGGATCAAAAGGAATCACAGTTTTCATCATTGAAAAGGGCATTGAAGGCTTCAGCACTGCTCAAAAGCTGGACAAGCTTGGGATGCGGGGTAGTGATACATGTGAACTGGTTTTTGAGAATTGCTTTGTCCCTGAAGAGAATGTACTAGGG

Fln Alignment:

biogeco3_mira_c26935___MWCTNGPVAETLIIYAKTDPNAGSKGITVFIIEKGIEGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLG
B8LPF0__________________MWCTNGPVAETLIIYAKTDPNAGSKGITTFIIEKGMEGFSTAQKLDKLGMRGSDTCELVFENCFVPEENILG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain