SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene25035

Length: 246 nt

UniGene Fasta

>biog3_v1.0_unigene25035
ACAACGTGTGATATTGCTGGAACAGTCTCTCTGTCTTAGTCAGAGGTCTGCAGCTGTGGACATAGGATCACTGTGTTTGATTATAAAGGAGCAGGAAGCAAAGATCAAGACACTTGAGCAAGATGTTGGCAAGCTTCAACAAAACATGAAAACTTCTGATGTTTCTGCTGAAGTTTTGCAATTACGTCGAGAAATGCGGAGTTTACAAAAGAAAATGGATAGTCAGAGCCTTAAATAGAGAGACTG

Ace file of the UniGene biog3_v1.0_unigene25035

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9539	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	homogentisate solanesyltransferase [Arabidopsis thaliana] ref\|NP_001189865.1\| homogentisate solanesyltransferase [Arabidopsis thaliana] gb\|AAF23211.1\|AC016795_24 hypothetical protein [Arabidopsis thaliana] dbj\|BAB03105.1\| unnamed protein product [Arabidop	-	-	46%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	50%
Blast2go	homogentisate solanesyltransferase	-	-	65%

Source	GOs	Term	Type	Identity
Blast2go	metal ion binding	GO:0046872	Molecular Function	65%
Blast2go	catalytic activity	GO:0003824	Molecular Function	65%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	65%

Source	InterPros	Term	Type	Identity
Sma3	Phox/Bem1p	IPR000270	-	-
Sma3	Zinc finger, TRAF-type	IPR001293	-	-
Sma3	Plant regulator RWP-RK	IPR003035	-	-
Sma3	Peptidase S26A, signal peptidase I, conserved site	IPR019758	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: A9REQ2

Fln msg: your sequence is shorter than subject: 79 - 373

Fln protein: QRVILLEQSLCLSQRSAAVDIGSLCLIIKEQEAKIKTLEQDVGKLQQNMKTSDVSAEVLQLRREMRSLQKKMDSQSLK*

Protein Length: 80

Fln nts: ACAACGTGTGATATTGCTGGAACAGTCTCTCTGTCTTAGTCAGAGGTCTGCAGCTGTGGACATAGGATCACTGTGTTTGATTATAAAGGAGCAGGAAGCAAAGATCAAGACACTTGAGCAAGATGTTGGCAAGCTTCAACAAAACATGAAAACTTCTGATGTTTCTGCTGAAGTTTTGCAATTACGTCGAGAAATGCGGAGTTTACAAAAGAAAATGGATAGTCAGAGCCTTAAATAG___AGAGACTG

Fln Alignment:

biogeco3_mira_c26901___QRVILLEQSLCLSQRSAAVDIGSLCLIIKEQEAKIKTLEQDVGKLQQNMKTSDVSAEVLQLRREMRSLQKKMDSQS
A9REQ2__________________QSLLFVEKAVQLAQRSEAVSVGNMNVTVKEQENRVKLLEVEVKKLKENLKATDVSAEVLQLMRELRNLQKQVESLS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain