SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24963

Length: 371 nt

UniGene Fasta

>biog3_v1.0_unigene24963
AATGTCTTTGCGCAGATCCTTCAGCGGCTACCCAGAGGCGACGCATCGGCTTCCAACAGCTACTCTGGGAACGCCACACCGTTTAAGGTACAAGTTAATTTCGAAATCCCCATCTTCGAGGGTCAAATAGACGCAGATGCTGTAGATAAATGGTTAAACCTGCTAGATGGGTATTTTTCTGTTCATGAATTTTCAAGTCGGGAAAAGATTGTTTTCGCTCTTCTCAAAGCAGCCCCCCACGTCAAGGACTGGTGGGAAACCTACTGTCGAGCAGAAGAATGAAAGCACTGGCTCGCTATTTTCAGCTGCACCCACCTGGGATTCGTTCCGGGATGCCATCAAGGAGCAGTACTACCCTGTCGGAAGACATT

Ace file of the UniGene biog3_v1.0_unigene24963

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene12799	1/2
SustainPine v2.0	sp_v2.0_unigene23656	1/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Asparagus officinalis (Garden asparagus).	-	-	0.0	40%
Blast2go	protein	-	-	1.73859e-15	45%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular process	GO:0009987	Biological Process	1.73859e-15	45%
Blast2go	binding	GO:0005488	Molecular Function	1.73859e-15	45%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: Q2XNX9

Fln msg: your sequence is shorter than subject: 94 - 176

Fln protein: NVFAQILQRLPRGDASASNSYSGNATPFKVQVNFEIPIFEGQIDADAVDKWLNLLDGYFSVHEFSSREKIVFALLKAAPHVKDWWETYCRAEE*

Protein Length: 95

Fln nts: AATGTCTTTGCGCAGATCCTTCAGCGGCTACCCAGAGGCGACGCATCGGCTTCCAACAGCTACTCTGGGAACGCCACACCGTTTAAGGTACAAGTTAATTTCGAAATCCCCATCTTCGAGGGTCAAATAGACGCAGATGCTGTAGATAAATGGTTAAACCTGCTAGATGGGTATTTTTCTGTTCATGAATTTTCAAGTCGGGAAAAGATTGTTTTCGCTCTTCTCAAAGCAGCCCCCCACGTCAAGGACTGGTGGGAAACCTACTGTCGAGCAGAAGAATGA___AAGCACTGGCTCGCTATTTTCAGCTGCACCCACCTGGGATTCGTTCCGGGATGCCATCAAGGAGCAGTACTACCCTGTCGGAAGACATT

Fln Alignment:

biogeco3_mira_c26811___NSYSGNATPFKVQVNFEIPIFEGQIDADAVDKWLNLLDGYFSVHEFSSREKIVFALLKAAPHVKDWWETYCRAEE
Q2XNX9__________________NSYQNLKIDFKV----EILIYDGSVDVERLDDWIERMETYFTLYGYSSKEKIVFTTLKLSGHALTWWKSYCKQEK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain