SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24908

Length: 325 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene24908
CTTTGCGTGCAGGTGACTAAATCTGGTGAATTTCTGTTTGTTCAGCTGTGAGACATGTAGCTGGAAACATGTTTGATAGCGTACCAAGTGGCCAAACAATTTTTATGAAGTGGATTCTCCCAGTGGCTGCAGAGACATCCCTTACGCTCGACAGGCATCTCATTTAGATTTGATGATGTTGGCATACATCCGGGGGGCAAGGAGCGAACTGAGCAAGAATTTCAAGGGTTGGGGCATGCAGCAGGATTCGAAGGAGGTGTTAAGCCCATATGTTGTGTCAATGGATTGTGGGTAAATAGGAGTTTCACAAGTGTAGCCTGACATT

Ace file of the UniGene biog3_v1.0_unigene24908 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene30441	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Caffeate O-methyltransferase n=4 Tax=Picea RepID=Q5NDD5_PICAB	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	caffeic acid 3-o-methyltransferase	-	-	81%

Source	InterPros	Term	Type	Identity
Sma3	O-methyltransferase, COMT, eukaryota	IPR016461	-	-
Sma3	O-methyltransferase, family 2	IPR001077	-	-
Sma3	Plant methyltransferase dimerisation	IPR012967	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NLA6

Fln msg: Warning!, your query overlaps and the subject is separated, and overlapping frame ERROR between 235 and 190, Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 107 - 365

Fln protein: LRAGD*IW*ISVCSAVRHVAGNMFDSVPSGQTIFMxxxxxSGCRDIPYARQASHLDLMMLAxxxxxxxxxxxxxxxxxxAAGFEGGVKPICCVNGLWVNRSFTSVA*

Protein Length: 108

Fln nts: CTTTGCGTGCAGGTGACTAAATCTGGTGAATTTCTGTTTGTTCAGCTGTGAGACATGTAGCTGGAAACATGTTTGATAGCGTACCAAGTGGCCAAACAATTTTTATGxxxxxxxxxxxxxxxAGTGGCTGCAGAGACATCCCTTACGCTCGACAGGCATCTCATTTAGATTTGATGATGTTGGCATAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGCAGCAGGATTCGAAGGAGGTGTTAAGCCCATATGTTGTGTCAATGGATTGTGGGTAAATAGGAGTTTCACAAGTGTAGCCTGACATT

Fln Alignment:

biogeco3_mira_c26742___AVRHVAGNMFDSVPSGQTIFMKWILxxxxxxxxxxxxxxxxxxxxxxxxxxxVDS--PSGCRDIPYARQASHLDLMMLAYIxxxxxxxxxxxxxxxHAAGFEGGVKPICCVNGLWV
A9NLA6__________________AVRHVGGDMFDGVPTGQAIFMKWILxxxxxxxxxxxxxxxxxxxxxxxxxxxVDSILPVAAETSPYARQGFHLDLMMLAYIxxxxxxxxxxxxxxxHAAGFVGGVKPICCVNGLWV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain