SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24860

Length: 856 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene24860

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27731	11/11

Source	Descriptions	Term	Type	Identity
AutoFact	MSCS-like 2 protein [Arabidopsis thaliana] dbj\|BAH20174.1\| AT5G10490 [Arabidopsis thaliana] gb\|AED91552.1\| MSCS-like 2 protein [Arabidopsis thaliana]	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	84%
Blast2go	mscs-like 2 protein	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	plastid organization	GO:0009657	Biological Process	70%
Blast2go	ion channel activity	GO:0005216	Molecular Function	70%
Blast2go	plastid envelope	GO:0009526	Cellular Component	70%
Blast2go	chloroplast	GO:0009507	Cellular Component	70%

Source	InterPros	Term	Type	Identity
Sma3	Transposase, MuDR, plant	IPR004332	-	-
Sma3	Zinc finger, PMZ-type	IPR006564	-	-
Sma3	Mechanosensitive ion channel MscS	IPR006685	-	-
Sma3	Zinc finger, SWIM-type	IPR007527	-	-
Sma3	Extracellular solute-binding protein, family 3, conserved site	IPR018313	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9RJX3

Fln msg: Distance to subject end: 271 aas, your sequence is shorter than subject: 284 - 705

Fln protein: CSSTYHIMTSYLQPILLWLGAILICRAFDPVVLSSETSQAVKQRLVNFVRSLSTVLAFAYCISSLIQQAQKFVMEHNDTQDTRHVGFNFIGKAIYTAVWVAAVSLFMELLGFSTQKWITAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVSEWIQTKIDGYEVSGTVEHVGWWSPTIVRGDDREAVHIPNHKFTVSVVRNLTQKSHWRIKTHLAISHLDVSKIGNIVADMRKVLAKNHQVEQQRLHRRVFLDNIDPENQALLILVSCFVKTPHFEEYLCVT

Protein Length: 285

Fln nts: AATGTAGCAGCACATATCACATCATGACCTCCTATTTACAGCCAATTCTGCTATGGTTAGGTGCAATATTGATCTGCAGGGCTTTTGATCCTGTTGTGTTATCCTCTGAAACAAGCCAAGCTGTCAAGCAGCGGCTTGTAAACTTTGTGAGATCGCTATCAACTGTCTTGGCTTTTGCATATTGTATATCTAGCTTGATTCAGCAGGCACAGAAATTTGTAATGGAGCACAATGACACCCAGGACACAAGACATGTTGGATTTAACTTCATTGGAAAAGCTATTTATACTGCAGTGTGGGTGGCAGCGGTATCCTTGTTCATGGAGCTATTGGGGTTTTCAACACAGAAATGGATCACTGCTGGAGGGCTGGGAACAGTTTTGTTGACTCTTGCTGGTCGTGAGATATTTACCAATTTCCTGTCAAGTGTAATGATCCATGCAACTCGCCCTTTTGTTGTGAGTGAGTGGATTCAAACCAAGATCGACGGCTATGAAGTTTCTGGAACTGTGGAACATGTTGGTTGGTGGTCTCCAACTATTGTCAGAGGAGATGATCGGGAGGCTGTGCATATTCCAAATCACAAGTTCACTGTGAGTGTTGTTCGGAATCTTACTCAAAAGAGCCATTGGCGCATTAAGACTCATCTCGCTATCAGCCATCTAGATGTCAGCAAAATTGGTAATATTGTAGCTGATATGCGGAAAGTCTTAGCAAAAAATCATCAAGTGGAGCAACAACGGTTGCATCGAAGAGTATTTTTGGATAATATCGATCCAGAAAATCAGGCACTTTTGATTTTGGTTTCTTGCTTTGTAAAGACCCCCCACTTTGAAGAGTATCTTTGTGTTACATT

Fln Alignment:

biogeco3_mira_c26579___SSTYHIMTSYLQPILLWLGAILICRAFDPVVLSSETSQAVKQRLVNFVRSLSTVLAFAYCISSLIQQAQKFVMEHNDTQDTRHVGFNFIGKAIYTAVWVAAVSLFMELLGFSTQKWIXXXXXXXXXXXXXXREIFTNFLSSVMIHATRPFVVSEWIQTKIDGYEVSGTVEHVGWWSPTIVRGDDREAVHIPNHKFTVSVVRNLTQKSHWRIKTHLAISHLDVSKIGNIVADMRKVLAKNHQVEQQRLHRRVFLDNIDPENQALLILVSCFVKTPHFEEYLCV
B9RJX3__________________SSTHYVLTSYLQPLLLWTGAILVCRALDPVVLQSEANQAVKQRLLNFVRSLSTVMAFAYCLSSLIQQAQKFFTEMNDSSDARNMGFSFAGKAVYSAVWIAAVSLFMELLGFSTQKWLTAGGLGTVLITLAGREILTNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTVIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVNKVNNIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALMILVSCFVKTSHFEEYLCV

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
336	33		66		0.997452
337	33			33	0.997753
339			33	66	0.997453
501	66	33			0.997464
502	33		66		0.997464
545	33			66	0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain