SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene24831

Length: 1043 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene24831 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15058	10/15
SustainPine v2.0	sp_v2.0_unigene24271	1/15
SustainPine v2.0	sp_v2.0_unigene24329	1/15
SustainPine v2.0	sp_v2.0_unigene25822	1/15
SustainPine v2.0	sp_v2.0_unigene82758	2/15

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	75%
Blast2go	phytoalexin-deficient 4-1 protein	-	-	69%

Source	InterPros	Term	Type	e value	Identity
Sma3	Lipase, class 3	IPR002921	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NW04

Fln msg: your sequence is shorter than subject: 340 - 616

Fln protein: HGAACIDNCETILMMLYLTMKSHEKSYDNIVQDWFSAHIGYDSVLKHVLENSISGKRFANSDSESSYKIGILVQLEAIGFESQNDHAQLALQKAGETETKYNTNVDRLAIELSLKQRTMAELEWYKES*QKEGGVGYYDTFKHQDKMDIHADGNRMKLARFWDDIIEKWEGHELPSDFESQNKWINAGNTYRKLVEPLDIGSYYRTNSNGNYLSDGRHNRHKVLQKWMEAKEKARGSRGQRPRTKRASLTPDSCLWAHVEEARKDLENLKQGQHESLQKLEKFEEYVTKMEKNHSISGDVFFQGSSFMMWWEEWKEYKMNQSPDWLSPLCQRIEAWQLV*

Protein Length: 341

Fln nts: CCATGGCGCAGCTTGCATTGATAATTGTGAGACCATTTTGATGATGCTTTATTTGACAATGAAGAGCCATGAAAAGTCATATGATAATATTGTACAGGACTGGTTTTCAGCGCATATAGGATATGATTCTGTTTTGAAACATGTCTTAGAAAACTCCATAAGTGGTAAAAGATTTGCCAATTCTGATTCCGAATCCTCCTACAAGATAGGAATCTTGGTGCAATTAGAAGCTATCGGTTTTGAATCTCAGAATGATCATGCACAGCTTGCCCTCCAGAAAGCTGGAGAAACTGAAACCAAGTATAACACAAATGTTGATAGGCTAGCTATTGAGTTAAGCCTAAAACAAAGAACTATGGCAGAGCTTGAATGGTATAAAGAGAGTTGACAGAAGGAGGGTGGCGTCGGATATTATGATACCTTTAAGCACCAAGACAAGATGGATATCCATGCTGATGGCAATAGGATGAAGCTCGCTAGGTTTTGGGATGACATTATTGAAAAATGGGAAGGTCATGAGTTGCCAAGTGATTTCGAGTCCCAAAATAAGTGGATAAATGCTGGCAATACATATAGAAAACTGGTGGAGCCTCTGGATATTGGATCTTATTATCGCACAAACAGCAATGGCAACTATCTTTCTGATGGAAGACACAATCGCCATAAAGTTCTTCAGAAATGGATGGAAGCGAAGGAAAAAGCTCGCGGTTCAAGAGGTCAACGACCCCGCACAAAGCGTGCATCCCTCACCCCGGACTCGTGCCTTTGGGCACATGTAGAAGAGGCTCGGAAAGACCTGGAAAATCTAAAACAAGGCCAACACGAAAGCCTACAAAAGCTTGAAAAGTTTGAAGAGTATGTAACAAAGATGGAAAAGAATCACAGCATTTCTGGAGATGTTTTCTTCCAAGGAAGCAGCTTCATGATGTGGTGGGAGGAATGGAAAGAGTATAAGATGAATCAATCCCCTGATTGGCTCTCTCCTTTATGTCAGAGAATAGAAGCGTGGCAGCTTGTTTGA___ATGGAAAAGCGGTTTAGACATT

Fln Alignment:

biogeco3_mira_c26178___HGAACIDNCETILMMLYLTMKSHEKSYDNIVQDWFSAHIGYDSVLKHVLENSISGKRFANSDSESSYKIGILVQLEAIGFESQNDHAQLALQKAGETETKYNTNVDRLAIELSLKQRTMAELEWYKES*QKEGGVGYYDTFKHQD-KMDIHADGNRMKLARFWDDIIEKWEGHELPSDFESQNKWINAGNTYRKLVEPLDIGSYYRTNSNGNYLSDGRHNRHKVLQKWMEAKEKARGSRGQRPRTKRASLTPDSCLWAHVEEARKDLENLKQGQHESLQKLEKFEEYVTKMEKNHSISGDVFFQGSSFMMWWEEWKEYKMNQSPDWLSPLCQRIEAWQLV
A9NW04__________________HGAACIDNSETILKLLHFTMQSHEKLSDNIVQDWFSEHIGYGAVLKHVIENSISGKRFANPDSKSSYEMGISLQLEAIGVGAQNDHAQFALRRAGETEDNYNTNVDKLAIELSLKQSSMAELEWYKERCEKEDGITYYDSFKKQNNRKDFRANVDRKKLCQFWDEIIEKWEGHELPSDFESQNKWINAGNTYRRLVEPLDIASYYRTNGNGNYLSDGRPNRHKILQRWMEAKEKTRSSRGQRPRTKRASLTADSCFWAHVEEAWKDLENLKQGQHQSLQKLEKFEEDVTNMENALTISPDVFLEGSSFIMWWEEWKEYKKNQSPEWSSPLYKIMEKLQVI

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
812		80		20	0.995493
813		80	20		0.995493
814			80	20	0.995493
850	20		80		0.995493
880	25			75	0.996473
932		33		66	0.997454
972	33			66	0.997459
1016		33		66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain